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Issues list

How can I save the heatmap from plot_gsva_heatmap with ggplot2 ? question Further information is requested
#77 by camilla0801 was closed Jul 25, 2023
@jgriss
2
convert_reactome_result function not found
#76 by nearvh was closed Jun 25, 2023
1
ReactomeGSA API not working?
#75 by quyaingo was closed Mar 2, 2023
@jgriss
6
Obtaining features from perform_reactome_analysis function
#74 by ejc043 was closed Jul 25, 2023
3
Statistical significance from single-cell cluster analysis
#72 by LuciaJim was closed Mar 7, 2023
@jgriss
6
Pathway analysis on Spatial data 10x Visium question Further information is requested
#71 by cathalgking was closed Mar 20, 2023
@jgriss
3
Lazy database invalid This doesn't seem right
#69 by querques was closed Mar 2, 2023
@jgriss
1
Can we integrate Lipidomics, Metabolomics with RNA-seq, proteomics with ReactomeGSA？
#68 by Shicheng-Guo was closed Oct 5, 2022
1
perform_reactome_analysis does'nt create a reactome visualization
#66 by SimonBedenbender was closed Aug 19, 2022
2
use the latest Reactome release
#65 by jlduan was closed Jul 28, 2022
1
Selected Pathways
#63 by brookeabrown was closed Mar 20, 2023
@jgriss
1
Convert http to https in report download urls
#59 by cqgong was closed Apr 4, 2022
1
Request failed (503 - Service Unavailable)
#58 by Luq16 was closed Jan 6, 2022
1
the API of gsa.reactome not work for analyse_sc_clusters
#55 by xflicsu was closed Jun 22, 2022
@jgriss
4
Use consistent FDR thresholds to define significantly regulated pathways bug Something isn't working enhancement New feature or request
#54 by jgriss was closed Nov 5, 2021
@jgriss
1
The plot_gsva_heatmap function make a wrong plot with a reversed trend. invalid This doesn't seem right
#47 by bravedu01 was closed Oct 22, 2021
@jgriss
3
Error in plot_gsva_pca(gsva_pbmc) : object 'gsva_result' not found bug Something isn't working
#46 by bravedu01 was closed Oct 22, 2021
@jgriss
8
Request failed (503 - Service Unavailable): Failed to connect to storage system
#45 by Ankita-1211 was closed Sep 21, 2021
5
Error: Failed to connect to ReactomeGSA
#44 by Ankita-1211 was closed Sep 21, 2021
2
Running reactomeGSA on multiple resolution cluster separately
#41 by Ankita-1211 was closed Sep 14, 2021
Request Failed -- 503 -- Service Unavailable -- Is Reactome API down? bug Something isn't working
#38 by hcchau418 was closed Sep 9, 2021
@jgriss
2
Running reactomeGSA for species other than human question Further information is requested
#36 by Ankita-1211 was closed Sep 8, 2021
@jgriss
Error: Only one identification found: 'RNA_snn_res.0.6 question Further information is requested
#34 by Ankita-1211 was closed Aug 12, 2021
@jgriss
1
heatmap labels of the cells clusters are squished
#32 by jjyotikataria was closed Jul 12, 2021
reproducibility of the ReactomeGSA
#28 by FADHLyemen was closed Jul 9, 2021
4
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