Reactome

A curated pathway database

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reactome2py reactome2py Public

python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

Python 25 10
ReactomeGSA ReactomeGSA Public

R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

R 21 4
graph-core graph-core Public

Models the Reactome knowledgebase into a interconnected graph

Java 18 6
content-service content-service Public

The new Reactome REST API to access the data

Java 10 5
container container Public

🚧 Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". 🚧

Perl 9 4
graph-importer graph-importer Public

Converts the Reactome knowledgebase into a interconnected graph

Java 7 3

Repositories

reactome_chatbot Public
This is Reactomes chatbot to its database and search index

reactome/reactome_chatbot’s past year of commit activity

Python 0 Apache-2.0 0 0 1 Updated Jul 12, 2024
graph-add-links Public

reactome/graph-add-links’s past year of commit activity

Java 0 0 0 0 Updated Jul 11, 2024
release-update-stable-ids Public
Data-release-pipeline: Updates stable identifiers of manually curated instances

reactome/release-update-stable-ids’s past year of commit activity

Java 0 0 1 1 Updated Jul 11, 2024
Pathway-Exchange Public
Pathway Exchange Code Repository

reactome/Pathway-Exchange’s past year of commit activity

Java 0 1 2 0 Updated Jul 11, 2024
CuratorTool Public
The Reactome Java API for the relational database and the Curator Tool

reactome/CuratorTool’s past year of commit activity

Java 3 7 11 5 Updated Jul 11, 2024
release-go-update Public
Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)

reactome/release-go-update’s past year of commit activity

Java 1 0 4 0 Updated Jul 10, 2024
gsa-backend Public
Backend code of the Kubernetes based ReactomeGSA Analysis System

reactome/gsa-backend’s past year of commit activity

Python 4 1 17 0 Updated Jun 28, 2024
release-common-lib Public
Data-release-pipeline: Common code for Reactome data-release-pipeline steps

reactome/release-common-lib’s past year of commit activity

Java 0 0 3 3 Updated Jun 26, 2024
release-jenkins-utils Public
Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

reactome/release-jenkins-utils’s past year of commit activity

Groovy 0 1 5 0 Updated Jun 26, 2024
ReactomeGSA Public
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

reactome/ReactomeGSA’s past year of commit activity

R 21 4 17 1 Updated Jun 26, 2024