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Fengshan Liang and Yanchang WangDNA Damage Checkpoints Inhibit Mitotic Exit byTwo Different MechanismsMOLECULAR AND CELLULAR BIOLOGY,  July 2007, p. 5067–5078Presenter: MilapThakerProseminar in Molecular and Cellular BiologyHarvard UniversityDate 11/29/2007
Key Point 1: Two Different MechanismsMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology2
Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology3Key Point 1: Two Different Mechanisms
Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology4
Relevant context: How to activate Mitotic Exit Network?Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology5
Mitotic Exit Network: Take 2MilapThaker - Graduate Proseminar - Molecular and Cellular Biology6
Alternate Mechanism: The FEAR Pathway:FEAR: CDC14 Early Anaphase ReleaseMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology7
Mitotic Exit Network vs. CDC14 Release: Specific Temporal DifferencesMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology8
Materials and MethodsYeast Strains grown in YPD (standard yeast-extract-peptone-dextrose) mediumArrested in G1 by 5 µg/ml α-factorAfter 2 hours, washed 2x with waterCytology: Cells fixed with 3.7% formaldehyde for 5 min at RT, then washed twice with PBS buffer (phosphate buffered saline) and resuspended in PBSMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology9
DAPI Staining TechniqueCells fixed with 100% MeOH at -20 Celsius for 30 mins.Cells pelleted, resuspended in DAPI at a final concentration of 2.5µg/ml for 1 min at RTCells finally resuspended in 1X PBSFluorescence microscopy used to examine GFP and DNAMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology10
Protein TechniquesFor Immunoprecipitation, cells harvested (50 ml) and protein extracts are prepared with RIPA
RIPA = Radioimmunoprecipitation Assay
Incubated with Anti-HA (hemagglutinin) antibody
Washed in SDS (sodium dodecyl sulfate) protein-loading buffer
Boiled 5 mins, resolved with 8% SDS gelResults 1aMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology12KEY ELEMENTS TO NOTE:WILD TYPE HIGH COLONIZATIONLANE 2 NO COLONIZATIONALSO, NOTE LANE 6 HIGH COLONIZATION (rad53)
Results 2 – short spindlingMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology13Fig 1b
Results 3 – RebuddingMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology14Fig 1c
Re-Incubated CellsMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology15Fig 1c
Results 4 – cdc 14 ReleaseMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology16Fig 2a
Cdc 14 Localization - ImagesMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology17Fig 2a(2)
Cdc 14 ReleaseMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology18Fig 2B
Rebudding of Cells (2)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology19Fig 3a
Rebudding of Cells (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology20Fig 3a(2)
Cdc 14 Release (2)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology21Fig 3B
Budding, CDC 14 Release (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology22Fig 4a,b
Microcolonies (2)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology23Fig 4C
Budding, CDC 14 (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology24Fig 5a
Budding, Cdc 14 Release (4)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology25Fig 5B
Microcolonies (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology26Fig 5C
Budding, Cdc14 Release (5)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology27Fig 6a
Budding, Cdc 14 Release (6)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology28Fig 6B
Colonization across statesMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology29Fig 6C
Nuclear Localization, SegregationMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology30Fig 7a
Budding, cdc 14 Localization (6)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology31Fig 7b
Cdc 5-1 mutation vs. Cdc5-1RAD53-21Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology32Fig 7c
Western Blot, StatesMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology33Figs 8a, 8b
Master Conclusion Set (1)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology34Fig 8c

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Milap Thaker - Biology Powerpoint: Harvard University - DNA Damage Checkpoints

  • 1. Fengshan Liang and Yanchang WangDNA Damage Checkpoints Inhibit Mitotic Exit byTwo Different MechanismsMOLECULAR AND CELLULAR BIOLOGY, July 2007, p. 5067–5078Presenter: MilapThakerProseminar in Molecular and Cellular BiologyHarvard UniversityDate 11/29/2007
  • 2. Key Point 1: Two Different MechanismsMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology2
  • 3. Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology3Key Point 1: Two Different Mechanisms
  • 4. Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology4
  • 5. Relevant context: How to activate Mitotic Exit Network?Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology5
  • 6. Mitotic Exit Network: Take 2MilapThaker - Graduate Proseminar - Molecular and Cellular Biology6
  • 7. Alternate Mechanism: The FEAR Pathway:FEAR: CDC14 Early Anaphase ReleaseMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology7
  • 8. Mitotic Exit Network vs. CDC14 Release: Specific Temporal DifferencesMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology8
  • 9. Materials and MethodsYeast Strains grown in YPD (standard yeast-extract-peptone-dextrose) mediumArrested in G1 by 5 µg/ml α-factorAfter 2 hours, washed 2x with waterCytology: Cells fixed with 3.7% formaldehyde for 5 min at RT, then washed twice with PBS buffer (phosphate buffered saline) and resuspended in PBSMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology9
  • 10. DAPI Staining TechniqueCells fixed with 100% MeOH at -20 Celsius for 30 mins.Cells pelleted, resuspended in DAPI at a final concentration of 2.5µg/ml for 1 min at RTCells finally resuspended in 1X PBSFluorescence microscopy used to examine GFP and DNAMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology10
  • 11. Protein TechniquesFor Immunoprecipitation, cells harvested (50 ml) and protein extracts are prepared with RIPA
  • 13. Incubated with Anti-HA (hemagglutinin) antibody
  • 14. Washed in SDS (sodium dodecyl sulfate) protein-loading buffer
  • 15. Boiled 5 mins, resolved with 8% SDS gelResults 1aMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology12KEY ELEMENTS TO NOTE:WILD TYPE HIGH COLONIZATIONLANE 2 NO COLONIZATIONALSO, NOTE LANE 6 HIGH COLONIZATION (rad53)
  • 16. Results 2 – short spindlingMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology13Fig 1b
  • 17. Results 3 – RebuddingMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology14Fig 1c
  • 18. Re-Incubated CellsMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology15Fig 1c
  • 19. Results 4 – cdc 14 ReleaseMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology16Fig 2a
  • 20. Cdc 14 Localization - ImagesMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology17Fig 2a(2)
  • 21. Cdc 14 ReleaseMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology18Fig 2B
  • 22. Rebudding of Cells (2)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology19Fig 3a
  • 23. Rebudding of Cells (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology20Fig 3a(2)
  • 24. Cdc 14 Release (2)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology21Fig 3B
  • 25. Budding, CDC 14 Release (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology22Fig 4a,b
  • 26. Microcolonies (2)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology23Fig 4C
  • 27. Budding, CDC 14 (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology24Fig 5a
  • 28. Budding, Cdc 14 Release (4)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology25Fig 5B
  • 29. Microcolonies (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology26Fig 5C
  • 30. Budding, Cdc14 Release (5)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology27Fig 6a
  • 31. Budding, Cdc 14 Release (6)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology28Fig 6B
  • 32. Colonization across statesMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology29Fig 6C
  • 33. Nuclear Localization, SegregationMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology30Fig 7a
  • 34. Budding, cdc 14 Localization (6)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology31Fig 7b
  • 35. Cdc 5-1 mutation vs. Cdc5-1RAD53-21Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology32Fig 7c
  • 36. Western Blot, StatesMilap Thaker - Graduate Proseminar - Molecular and Cellular Biology33Figs 8a, 8b
  • 37. Master Conclusion Set (1)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology34Fig 8c
  • 38. Cell cycle checkpoint path:Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology35
  • 39. Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology36ConclusionsRad53 key player in mitotic exit prevention
  • 40. This is because cdc13-1, rad53021 mutants exhibited cdc14 release
  • 41. Rad 53 kinase known to phosphorylate Dun1 directly, known activator of Dun1
  • 42. Dun1 plays a more direct role in regulating MEN than Rad53 (downstream)
  • 43. Authors contend possibility that Dun1 kinase phosphorylates Bfa1 and prevents Bfa1/Tem1 dissociation.
  • 44. Support: Less Bfa1-Tem1 complex in Rad53-21 when DNA damagedMaster Conclusion Set (3)Milap Thaker - Graduate Proseminar - Molecular and Cellular Biology37

Editor's Notes

  1. Specific areas of note: Cdc13-1 has high probability of short spindles Also, note that cdc13-1 rad 53 mutants look “most healthy” of mix