RCSB PDB - Pairwise Structure Alignment Tool

Pairwise Structure Alignment

This tool allows the selection of protein 3D structures for alignment. Use an existing PDB or Computed Structure Model entry ID, upload a local file with atomic coordinates, or enter a URL of a file on the web

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To cite this tool, please reference: 10.1093/bioinformatics/btae370

Visit our help page for guidance on using this tool and for detailed references on the alignment algorithms

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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Pairwise Structure Alignment

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