|
Status |
Public on Apr 27, 2017 |
Title |
Epigenetic Lanscape and BRD4 Transcriptional Dependency of PAX3-FOXO1 Driven Rhabdomyosarcoma |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other
|
Summary |
This SuperSeries is composed of the SubSeries listed below.
|
|
|
Overall design |
Refer to individual Series
|
|
|
Citation(s) |
28446439, 32744500, 34836971 |
|
Submission date |
Jun 26, 2016 |
Last update date |
Dec 15, 2021 |
Contact name |
Javed Khan |
E-mail(s) |
khanjav@mail.nih.gov
|
Phone |
2407606135
|
Organization name |
NCI, NIH
|
Department |
Genetics Branch
|
Lab |
Javed Khan
|
Street address |
37 Convent Dr.
|
City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
|
|
Platforms (2) |
GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
Samples (80)
|
|
This SuperSeries is composed of the following SubSeries:
|
GSE83724 |
PAX3-FOXO1 requires BRD4 to drive oncogene addiction in RMS cells [RNA-seq] |
GSE83725 |
PAX3-FOXO1 establishes myogenic super enhancers and recruits BRD4 de novo [7250 ChIP-seq] |
GSE83726 |
PAX3-FOXO1 establishes myogenic super enhancers [RMS Chip-seq] |
GSE83727 |
Chromatin looping evidence between PAX3-FOXO1 bound super enhancer and MYOD1 promoter [4C-seq] |
|
Relations |
BioProject |
PRJNA326873 |