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Status |
Public on Oct 01, 2015 |
Title |
High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila |
Organism |
Drosophila melanogaster |
Experiment type |
Other Genome binding/occupancy profiling by high throughput sequencing
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Summary |
Hi-C analysis of two Drosophila male cell lines, combined with 4C-seq of frequent long-range contacts between HAS.
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Overall design |
We carried out Hi-C experiments in the male Drosophila melanogaster cell lines S2 and clone8, both in biological duplicates. Analyses were complemented by 4C-seq and S2 and female Kc cells and with DNA FISH.
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Contributor(s) |
Ramírez F, Lingg T, Toscano S, Lam KC, Plamen G, Ho-Ryung C, Lajoie B, de Wit E, Zhang Y, de Laat W, Dekker J, Manke T, Akhtar A |
Citation(s) |
26431028 |
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Submission date |
Jun 25, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Fidel Ramirez |
Organization name |
Max Planck Institute for Immunobiology and Epigenetics
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Department |
Bioinformatics Unit
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Street address |
Stübeweg 51
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City |
Freiburg |
ZIP/Postal code |
79108 |
Country |
Germany |
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Platforms (4)
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GPL9058 |
Illumina Genome Analyzer (Drosophila melanogaster) |
GPL9061 |
Illumina Genome Analyzer II (Drosophila melanogaster) |
GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
GPL17275 |
Illumina HiSeq 2500 (Drosophila melanogaster) |
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Samples (100)
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Relations |
BioProject |
PRJNA253592 |
SRA |
SRP043568 |