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| Status |
Public on Sep 28, 2019 |
| Title |
Spaceflight and simulated microgravity conditions increase virulence of Serratia marcescens in the Drosophila melanogaster infection model |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
While it has been shown that astronauts suffer immune disorders after spaceflight, the underlying causes are still poorly understood and there are many variables to consider when investigating the immune system in a complex environment. Additionally, there is growing evidence that suggests that not only is the immune system being altered, but the pathogens that infect the host are significantly influenced by spaceflight and ground-based spaceflight conditions. In this study, we demonstrate that Serratia marcescens (strain Db11) was significantly more lethal to Drosophila melanogaster after growth on the International Space Station than ground-based controls, but that the host immune system is not significantly altered amongst known immune genes. High-throughput sequencing of wild-type (w1118) adult hosts infected with either space or ground-reared S. marcescens revealed few changes in gene expression, with 11 genes significantly differentially expressed (q-values <0.05) and only one gene related to the immune system. This data supports the main findings of the paper, which state that both spaceflight and low-shear modeled microgravity conditions increase the virulence of this pathogen, independent of the host immune system. This data, which shows that there are no significant immune-related changes to the host when infected with space-grown sample compared to ground-grown sample, provides further evidence that there are likely phenotypic changes to the pathogen itself that is causing increased virulence in spaceflight and in low-shear modeled microgravity.
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| Overall design |
RNA was extracted in triplicate from 2 pooled adult (2-3 day old female) Drosophila melanogaster (w1118) per treatment, with 4 total treatment groups (no injection control, sham injection with PBS, ground bacteria-injected, and space bacteria-injected) with poly(A)+ RNA libraries. Samples were multiplexed and sequenced 100bp paired-end ready were sequenced on one lane of the Illumina HiSeq-4000.
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| Contributor(s) |
Gilbert R, Torres M, Clemens R, Hateley S, Hosamani R, Wade W, Bhattacharya S, Pachter L |
| Citation(s) |
32047838 |
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| Submission date |
Sep 27, 2019 |
| Last update date |
Feb 18, 2020 |
| Contact name |
Rachel Rene Gilbert |
| E-mail(s) |
rachel.r.gilbert@nasa.gov
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| Organization name |
NASA Ames Research Center
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| Department |
Space Biosciences
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| Street address |
N261, Rm 105
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| City |
Moffett Field |
| State/province |
CA |
| ZIP/Postal code |
94035 |
| Country |
USA |
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| Platforms (1) |
| GPL21306 |
Illumina HiSeq 4000 (Drosophila melanogaster) |
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| Samples (12)
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| GSM4100372 |
Adult flies, Sham 1 (PBS injection) |
| GSM4100373 |
Adult flies, Sham 2 (PBS injection) |
| GSM4100374 |
Adult flies, Sham 3 (PBS injection) |
| GSM4100375 |
Adult flies, Ground 1 (Ground bacteria injected) |
| GSM4100376 |
Adult flies, Ground 2 (Ground bacteria injected) |
| GSM4100377 |
Adult flies, Ground 3 (Ground bacteria injected) |
| GSM4100378 |
Adult flies, Space 1 (Space bacteria injected) |
| GSM4100379 |
Adult flies, Space 2 (Space bacteria injected) |
| GSM4100380 |
Adult flies, Space 3 (Space bacteria injected) |
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| Relations |
| BioProject |
PRJNA574643 |
| SRA |
SRP223532 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE138116_RAW.tar |
4.8 Mb |
(http)(custom) |
TAR (of TSV) |
| GSE138116_sleuthwaldtesttable2.csv.gz |
1.3 Mb |
(ftp)(http) |
CSV |
| GSE138116_spacevsgroundWaldTest.csv.gz |
999 b |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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