Cited Publications

Featured Citations

Chong, Yoong Min, et al. “Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia.” Microbiology Resource Announcements, vol. 9, no. 20, 2020.

Bridgeman, B. J., et al. “Draft Genome Sequence of a New Zealand Isolate of Mycoplasma Ovipneumoniae.” Microbiology Resource Announcements, vol. 9, no. 10, 2020.

Deng, Xianding, et al. "Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California." Science, June 2020, https://doi.org/10.1126/science.abb9263.

Li, Zhang-Hai, et al. "Plastid Genome Evolution in the Subtribe Calypsoinae (Epidendroideae, Orchidaceae)." Genome Biology and Evolution, vol. 12, no. 6, June 2020, pp. 867–70, https://doi.org/10.1093/gbe/evaa091.

Jaimes, Javier A., et al. "Phylogenetic Analysis and Structural Modeling of SARS-CoV-2 Spike Protein Reveals an Evolutionary Distinct and Proteolytically Sensitive Activation Loop." Journal of Molecular Biology, vol. 432, no. 10, May 2020, pp. 3309–25, https://doi.org/10.1016/j.jmb.2020.04.009.

Nattier, Romain, and Karen Salazar. “Next-Generation Sequencing Yields Mitochondrial Genome of Coccidophilus Cariba Gordon (Coleoptera: Coccinellidae) from Museum Specimen.” Mitochondrial DNA Part B, vol. 4, no. 2, 2019, pp. 3780–3781.

Hidalgo-Cantabrana, Claudio, et al. "Genome editing using the endogenous type I CRISPR-Cas system in Lactobacillus crispatus." Proceedings of the National Academy of Sciences, vol. 116, no. 32, Aug. 2019, p. 15774, https://doi.org/10.1073/pnas.1905421116.

Brettell, Laura E., et al. "RNAseq Analysis Reveals Virus Diversity within Hawaiian Apiary Insect Communities." Viruses, vol. 11, no. 5, May 2019, p. 397, https://doi.org/10.3390/v11050397.

De Novo Assembly

Bridgeman, B. J., et al. “Draft Genome Sequence of a New Zealand Isolate of Mycoplasma Ovipneumoniae.” Microbiology Resource Announcements, vol. 9, no. 10, 2020.

Li, Zhang-Hai, et al. "Plastid Genome Evolution in the Subtribe Calypsoinae (Epidendroideae, Orchidaceae)." Genome Biology and Evolution, vol. 12, no. 6, June 2020, pp. 867–70, https://doi.org/10.1093/gbe/evaa091.

Nattier, Romain, and Karen Salazar. “Next-Generation Sequencing Yields Mitochondrial Genome of Coccidophilus Cariba Gordon (Coleoptera: Coccinellidae) from Museum Specimen.” Mitochondrial DNA Part B, vol. 4, no. 2, 2019, pp. 3780–3781.

Fu, Long-Fei, et al. “Complete Chloroplast Genome Sequence of Elatostema Dissectum (Urticaceae).” Mitochondrial DNA Part B, vol. 4, no. 1, 2019, pp. 838–839.

Bocsanczy, Ana Maria, et al. “Whole-Genome Sequences of Ralstonia Solanacearum Strains P816, P822, and P824, Emerging Pathogens of Blueberry in Florida.” Microbiol Resour Announc, vol. 8, no. 3, 2019, pp. e01316–18.

Mapping

Van Tan, Le, et al. "SARS-CoV-2 and co-infections detection in nasopharyngeal throat swabs of COVID-19 patients by metagenomics." Journal of Infection, vol. 81, no. 2, 2020, pp. e175–77, https://doi.org/10.1016/j.jinf.2020.06.033.

Chong, Yoong Min, et al. “Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia.” Microbiology Resource Announcements, vol. 9, no. 20, 2020.

Deng, Xianding, et al. "Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California." Science, June 2020, https://doi.org/10.1126/science.abb9263.

Zehender, Gianguglielmo, et al. "Genomic characterization and phylogenetic analysis of SARS-COV-2 in Italy." Journal of Medical Virology, vol. n/a, no. n/a, Mar. 2020, https://doi.org/10.1002/jmv.25794.

Brettell, Laura E., et al. "RNAseq Analysis Reveals Virus Diversity within Hawaiian Apiary Insect Communities." Viruses, vol. 11, no. 5, May 2019, p. 397, https://doi.org/10.3390/v11050397.

Alignment

Wong, Meng Li, et al. "Natural Wolbachia infection in field-collected Anopheles and other mosquito species from Malaysia." Parasites & Vectors, vol. 13, Aug. 2020, https://doi.org/10.1186/s13071-020-04277-x.

Tan, Jin, et al. “Characterization and Phylogenetic Analysis of Acheilognathus Chankaensis Mitochondrial Genome.” Mitochondrial DNA Part B, vol. 4, no. 1, 2019, pp. 1148–1149.

Moreira, Juliana, et al. “New Species and Records of Anacanthorus (Monogenea: Dactylogyridae) Parasitizing Serrasalmid Fish (Characiformes) from Brazil, Including Molecular Data.” Acta Parasitologica, vol. 64, no. 3, 2019, pp. 449–455.

Brettell, Laura E., et al. "RNAseq Analysis Reveals Virus Diversity within Hawaiian Apiary Insect Communities." Viruses, vol. 11, no. 5, May 2019, p. 397, https://doi.org/10.3390/v11050397.

Fister, Andrew S., et al. "Transient Expression of CRISPR/Cas9 Machinery Targeting TcNPR3 Enhances Defense Response in Theobroma cacao." Frontiers in Plant Science, vol. 9, 2018, https://doi.org/10.3389/fpls.2018.00268.

Phylogenetics

Giatsou, Eleni, et al. "Ultradeep sequencing reveals HIV-1 diversity and resistance compartmentalization during HIV-encephalopathy." AIDS, vol. 34, no. 11, Sept. 2020, pp. 1609–1614, https://doi.org/10.1097/QAD.0000000000002616.

Moreira, Juliana, et al. “New Species and Records of Anacanthorus (Monogenea: Dactylogyridae) Parasitizing Serrasalmid Fish (Characiformes) from Brazil, Including Molecular Data.” Acta Parasitologica, vol. 64, no. 3, 2019, pp. 449–455.

Liu, Qiaolin, et al. “Next-Generation Sequencing Yields the Complete Mitochondrial Genome of Corydoras Sterbai (Teleostei, Siluriformes, Callichthyidae, Corydoradinae).” Mitochondrial DNA Part B, vol. 4, no. 2, 2019, pp. 2880–2881.

Fu, Long-Fei, et al. “Complete Chloroplast Genome Sequence of Elatostema Dissectum (Urticaceae).” Mitochondrial DNA Part B, vol. 4, no. 1, 2019, pp. 838–839.

Brettell, Laura E., et al. "RNAseq Analysis Reveals Virus Diversity within Hawaiian Apiary Insect Communities." Viruses, vol. 11, no. 5, May 2019, p. 397, https://doi.org/10.3390/v11050397.

RNA-Seq

Hidalgo-Cantabrana, Claudio, et al. "Genome editing using the endogenous type I CRISPR-Cas system in Lactobacillus crispatus." Proceedings of the National Academy of Sciences, vol. 116, no. 32, Aug. 2019, p. 15774, https://doi.org/10.1073/pnas.1905421116.

Brettell, Laura E., et al. "RNAseq Analysis Reveals Virus Diversity within Hawaiian Apiary Insect Communities." Viruses, vol. 11, no. 5, May 2019, p. 397, https://doi.org/10.3390/v11050397.

Alcolea, Pedro J., et al. "RNA-seq analysis reveals differences in transcript abundance between cultured and sand fly-derived Leishmania infantum promastigotes." Parasitology International, vol. 67, no. 4, Aug. 2018, pp. 476–80, https://doi.org/10.1016/j.parint.2018.03.008.

Coronavirus

Chong, Yoong Min, et al. “Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia.” Microbiology Resource Announcements, vol. 9, no. 20, 2020.

Deng, Xianding, et al. "Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California." Science, June 2020, https://doi.org/10.1126/science.abb9263.

Jaimes, Javier A., et al. "Phylogenetic Analysis and Structural Modeling of SARS-CoV-2 Spike Protein Reveals an Evolutionary Distinct and Proteolytically Sensitive Activation Loop." Journal of Molecular Biology, vol. 432, no. 10, May 2020, pp. 3309–25, https://doi.org/10.1016/j.jmb.2020.04.009.

Stefanelli, Paola, et al. "Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe." Eurosurveillance, vol. 25, no. 13, Apr. 2020, p. 2000305, https://doi.org/10.2807/1560-7917.ES.2020.25.13.2000305.

Zehender, Gianguglielmo, et al. "Genomic characterization and phylogenetic analysis of SARS-COV-2 in Italy." Journal of Medical Virology, vol. n/a, no. n/a, Mar. 2020, https://doi.org/10.1002/jmv.25794.