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  1. A practical workflow for forensic species identification using direct sequencing of real-time PCR products

    Background

    Forensic scientists are often required to identify species of unknown biological samples. Although methods based on sequencing of DNA...

    Masanori Doi, Toshifumi Nakagawa, Migiwa Asano in Molecular Biology Reports
    Article 13 December 2023
  2. Low Throughput Direct Cycle Sequencing of Polymerase Chain Reaction (PCR) Products

    Polymerase Chain Reaction (PCR) products have been traditionally characterized by cloning and cycle sequencing. However, when quick sequencing data...
    George D. Zouganelis, Nikolaos Tairis in DNA Manipulation and Analysis
    Protocol 2023
  3. Penta-Primer Amplification Refractory Mutation System (PARMS) with Direct PCR-Based SNP Marker-Assisted Selection (D-MAS)

    The penta-primer amplification refractory mutation system (PARMS) is a high-throughput, low-cost, and automated genotyping assay system that utilizes...
    Chao Tan, Yanyu Yang in Plant Genotyping
    Protocol 2023
  4. A multiplex direct PCR method for the rapid and accurate discrimination of three species of spider mites (Acari: Tetranychidae) in fruit orchards in Beijing

    Spider mites ( Acari : Tetranychidae ) are polyphagous pests of economic importance in agriculture, among which the two-spotted spider mite Tetranychus...

    Can Lu, Shao-dong Hao, ... Jin-zhong Wang in Experimental and Applied Acarology
    Article 15 March 2024
  5. Multiplex on-Chip PCR with Direct Detection of Immobilized Primer Elongation

    A variant of multiplex PCR on a chip with direct detection of immobilized primer elongation has been developed. Detection is performed by determining...

    S. A. Lapa, E. S. Klochikhina, ... A. V. Chudinov in Russian Journal of Bioorganic Chemistry
    Article 01 September 2021
  6. QIAGEN’s Investigator® 24plex QS and GO! PCR Amplification

    The Investigator® 24Plex kits are multiplex PCR kits utilized by forensic laboratories to simultaneously amplify 22 of the most commonly utilized STR...
    Michelle D. Bonnette in Forensic DNA Analysis
    Protocol 2023
  7. Applied Biosystems’ GlobalFiler™ PCR Amplification Kit

    The GlobalFiler™ PCR Amplification Kit is one of the most sensitive kits that exist today that makes the PCR amplification of human DNA possible. PCR...
    Georgia Williams, Megan M. Foley, Kelly L. Knight in Forensic DNA Analysis
    Protocol 2023
  8. DNA Extraction from Clinical Specimens for the Direct Detection of Mycobacterium ulcerans by Real-Time PCR

    Mycobacterium ulcerans is a slow-growing environmental bacterium that causes a severe skin disease known as Buruli ulcer (BU). Rapid detection of M....
    Caroline J. Lavender, Janet A. M. Fyfe in Mycobacterium ulcerans
    Protocol 2022
  9. Rapid and robust squashed spore/colony PCR of industrially important fungi

    Background

    Fungi have been utilized for centuries in medical, agricultural, and industrial applications. Development of systems biology techniques has...

    Guoliang Yuan, Jeffrey J. Czajka, ... Jon K. Magnuson in Fungal Biology and Biotechnology
    Article Open access 08 July 2023
  10. Successful application of modified crude DNA extraction from muscle tissues for various types of PCR amplifications

    Background

    One of the most challenging aspects of nucleic acid amplification tests is the extraction of genomic DNA. However, achieving satisfactory...

    Sana Jafar, Salman Jamil, ... Muhammad Imran in Molecular Biology Reports
    Article 05 April 2024
  11. Real-Time or Quantitative PCR

    Real-time PCR is employed for the estimation of differential mRNA expression profile of genes. It is the quantitative expression of a series of genes...
    Protocol 2022
  12. Direct Detection of SARS-CoV-2 RNA in Saliva with Colorimetric RT-LAMP

    RT-LAMP is an effective alternative to RT-PCR-based diagnostics, offering high specificity, sensitivity, and rapid results. One notable advantage is...
    Catarina Amaral, Catarina Pimentel in RNA Amplification and Analysis
    Protocol 2024
  13. Applications of Quantitative PCR (qPCR) in Studies of Virus-Host Interactions

    Emerging viruses pose significant threats to human health and the global economy. In the past two decades, three different coronaviruses have emerged...
    Kim R. Chiok, Kaushal Baid, Arinjay Banerjee in Intracellular Pathogens
    Protocol 2024
  14. Rapid screening of point mutations by mismatch amplification mutation assay PCR

    Abstract

    Metabolic engineering frequently makes use of point mutation and saturation mutation library creation. At present, sequencing is the only...

    Feng Zhang, Zhen Yang Liu, ... Jian Zhong Xu in Applied Microbiology and Biotechnology
    Article Open access 02 February 2024
  15. Timely gene detection assay and reliable screening of genetically engineered plants using an improved direct PCR-based technology

    Engineered plants have been widely produced for fundamental and practical use. Several methods have been developed for genetically modified crop...

    Anis Ben-Amar, Ahmed Mliki in Transgenic Research
    Article 21 April 2021
  16. Primer extension refractory PCR: an efficient and reliable genome walking method

    Genome walking, a molecular technique for obtaining unknown flanking genomic sequences from a known genomic sequence, has been broadly applied to...

    Haixing Li, Zhiyu Lin, ... Dongying Wang in Molecular Genetics and Genomics
    Article 11 March 2024
  17. Assessing nuclear versus mitochondrial cell-free DNA (cfDNA) by qRT-PCR and droplet digital PCR using a piglet model of perinatal asphyxia

    Background

    Since the discovery more than half a century ago, cell-free DNA (cfDNA) has become an attractive objective in multiple diagnostic,...

    Marie Bitenc, Benedicte Grebstad Tune, ... Lars Oliver Baumbusch in Molecular Biology Reports
    Article Open access 13 December 2022
  18. Usefulness of Quantitative PCR in Forensic Genetics

    Although most DNA studies in forensic genetics are focused on the sample, including DNA extraction and amplification, sample quantification is an...
    Christian Haarkötter, M. J. Alvarez-Cubero, ... María Saiz in Handbook of DNA Profiling
    Reference work entry 2022
  19. A Panel of Real-Time PCR Assays for the Direct Detection of All of the Xylella fastidiosa Subspecies

    The bacterial plant pathogenPlant pathogen Xylella fastidiosa causes disease in hundreds of plant species worldwide including many crops, and as such...
    Jennifer Hodgetts in Plant Pathology
    Protocol 2022
  20. Sensitive poliovirus detection using nested PCR and nanopore sequencing: a prospective validation study

    Timely detection of outbreaks is needed for poliovirus eradication, but gold standard detection in the Democratic Republic of the Congo takes 30 days...

    Alexander G. Shaw, Tresor Kabeya Mampuela, ... Placide Mbala-Kingebeni in Nature Microbiology
    Article Open access 17 August 2023
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