A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
-
Updated
Jul 20, 2024 - Python
A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
My intership at the IBEAS lab
From Waste to Feed | Insect Biotech Research Group
Personal website
Chemical metrics for microbial communities
Modelling and Inference of MICrobiomes Project (MIMIC) is a Python package dedicated to simulate, model, and predict microbial communities interactions
Supplementary Material for Blasche et al
Metabolic Engineering Workbench
3D Analysis of confocal images of microbial biofilms/communities
Functions to manipulate and visualize microbial community data
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
Minimal Supplying Community Search with constraint-based optimization methods.
RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".
Material for the lab course on anaerobic digestion
Interactive table for "Marcos Zambrano et al. (2023) A Toolbox of Machine Learning Software to Support Microbiome Analysis. Frontiers in Microbiology 14, 1250806"
A coarse-grained biochemical resource allocation model of phototrophic growth.
Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
Reproducible documentation for "Heussler and Klammsteiner et al. (2023). Microbial influences on black soldier fly reproduction: A focus on egg surface colonization. Research Square Preprint"
Environmental metagenomics, Spring 2023, Physalia Courses
Add a description, image, and links to the microbial-communities topic page so that developers can more easily learn about it.
To associate your repository with the microbial-communities topic, visit your repo's landing page and select "manage topics."