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Implementing tools to build and simulate microbial communities.
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Implementing tools to build and simulate microbial communities.
153 followers · 22 following

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Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2
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  1. reframed reframed Public

    ReFramed: metabolic modeling package

    Python 53 14

  2. carveme carveme Public

    CarveMe: genome-scale metabolic model reconstruction

    Python 145 50

  3. embl_gems embl_gems Public

    EMBL GEMs: A collection of GEnome-scale Models for bacterial species

    24 9

  4. smetana smetana Public

    SMETANA: a tool to analyse interactions in microbial communities

    Python 55 11

  5. HiOrCo HiOrCo Public

    Higher-Order Co-occurrence

    Python 9 3

  6. designmc designmc Public

    Designing microbial communities

    Python 5 3