2017 September Microbial Community Analysis Workshop
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Updated
Sep 12, 2017 - HTML
2017 September Microbial Community Analysis Workshop
October 2017 Microbial Community Analysis Workshop at ILRI Kenya
NOTE: The iroki command line tool is no longer maintained. Please see: https://github.com/mooreryan/iroki
FLYCOP (FLexible sYnthetic Consortium OPtimization)
Structured Queries and analyses used with MetamapsDB
Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"
Supplementary data for co-occurrence manuscript
Supplementary files for Ribeiro et al. ISME 2018
A simple package for simulations of microbial growth experiments with realistic sources of error.
SMETANA: a tool to analyse interactions in microbial communities
Easy-to-use tool facilitating work with Mothur.
Data and code for Kimbell et al., 2021
Environmental metagenomics, Spring 2021, Physalia Courses
Implementation of soft body interaction models (for multiple particles). Includes applications to (1) soil mechanics, (2) microbiology. Variants of the method: discrete element method, individual based model, molecular dynamics.
Benbow Lab at Michigan State University, Tutorials/example data for analysis of: 16S data, VCF files
Taller introductorio orientado a la visualización, análisis estadístico y ecológico en R, dirigido al manejo de datos en investigación, e impartido para la PUC durante 2021.
Data and code for LaMartina et al., 2021
Environmental metagenomics, Spring 2022, Physalia Courses
A metabolic modeling workflow for communities of organisms in an nasal medium.
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