Various functions for analysis of microbial community data
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Updated
Nov 16, 2022 - R
Various functions for analysis of microbial community data
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
The is mostly a wrapper tool using phyloseq and microbiome R packages.
Functions to manipulate and visualize microbial community data
Environmental metagenomics, Spring 2021, Physalia Courses
Environmental metagenomics, Spring 2022, Physalia Courses
3D Analysis of confocal images of microbial biofilms/communities
Chemical metrics for microbial communities
Data and code for LaMartina et al., 2021
Data and code for Kimbell et al., 2021
a versatile approach to integrate heterogeneous datasets
Scripts for a manuscript titled "Subsurface Microbial Communities Reflect Regional-Scale Groundwater Hydraulic Connectivity" (submitted)
Structured Queries and analyses used with MetamapsDB
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