prep for release

thomasp85 · Jan 5, 2024 · 766ad9b · 766ad9b
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diff --git a/NEWS.md b/NEWS.md
@@ -6,6 +6,9 @@
   y-direction, but also merge duplicated titles in the other direction (#150).
 * Fix a bug that prevented faceted plots with axes on the right from being
   used (#340)
+* Added `free()` function to mark a plot to not be aligned with the rest. The
+  margin of the plot will still be aligned with the margins of the other plots 
+  but everything inside of that will by unaligned. 
 
 # patchwork 1.1.3
 

diff --git a/cran-comments.md b/cran-comments.md
@@ -1 +1,17 @@
-This is a patch release with a range of bug fixes
+Minor release with some new functionality and changes in anticipation of next 
+ggplot2 release
+
+## revdepcheck results
+
+We checked 255 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+
+ * We saw 0 new problems
+ * We failed to check 3 packages
+
+Issues with CRAN packages are summarised below.
+
+### Failed to check
+
+* grandR   (NA)
+* Seurat   (NA)
+* triptych (NA)
diff --git a/revdep/README.md b/revdep/README.md
@@ -1,8 +1,10 @@
 # Revdeps
 
-## Failed to check (1)
+## Failed to check (3)
 
-|package     |version |error |warning |note |
-|:-----------|:-------|:-----|:-------|:----|
-|loon.ggplot |?       |      |        |     |
+|package  |version |error |warning |note |
+|:--------|:-------|:-----|:-------|:----|
+|grandR   |?       |      |        |     |
+|Seurat   |?       |      |        |     |
+|triptych |0.1.2   |1     |        |     |
 
diff --git a/revdep/cran.md b/revdep/cran.md
@@ -1,12 +1,14 @@
 ## revdepcheck results
 
-We checked 166 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 255 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
- * We failed to check 1 packages
+ * We failed to check 3 packages
 
 Issues with CRAN packages are summarised below.
 
 ### Failed to check
 
-* loon.ggplot (NA)
+* grandR   (NA)
+* Seurat   (NA)
+* triptych (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
@@ -1,14 +1,14 @@
-# loon.ggplot
+# grandR
 
 <details>
 
-* Version: 1.3.1
-* GitHub: https://github.com/great-northern-diver/loon.ggplot
-* Source code: https://github.com/cran/loon.ggplot
-* Date/Publication: 2022-02-07 21:50:06 UTC
-* Number of recursive dependencies: 104
+* Version: 0.2.2
+* GitHub: https://github.com/erhard-lab/grandR
+* Source code: https://github.com/cran/grandR
+* Date/Publication: 2023-04-20 21:22:30 UTC
+* Number of recursive dependencies: 265
 
-Run `cloud_details(, "loon.ggplot")` for more info
+Run `revdepcheck::cloud_details(, "grandR")` for more info
 
 </details>
 
@@ -17,25 +17,27 @@ Run `cloud_details(, "loon.ggplot")` for more info
 ### Devel
 
 ```
-* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’
-* using R version 4.1.1 (2021-08-10)
+* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’
+* using R version 4.3.1 (2023-06-16)
 * using platform: x86_64-pc-linux-gnu (64-bit)
+* R was compiled by
+    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
+    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
+* running under: Ubuntu 20.04.6 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘loon.ggplot’ version ‘1.3.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘loon’
-
-Package suggested but not available for checking: ‘zenplots’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+* checking for file ‘grandR/DESCRIPTION’ ... OK
+...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+  ‘getting-started.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
 * DONE
-Status: 1 ERROR
+Status: 2 NOTEs
 
 
 
@@ -45,28 +47,154 @@ Status: 1 ERROR
 ### CRAN
 
 ```
-* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’
-* using R version 4.1.1 (2021-08-10)
+* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’
+* using R version 4.3.1 (2023-06-16)
 * using platform: x86_64-pc-linux-gnu (64-bit)
+* R was compiled by
+    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
+    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
+* running under: Ubuntu 20.04.6 LTS
 * using session charset: UTF-8
 * using option ‘--no-manual’
-* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘loon.ggplot’ version ‘1.3.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘loon’
-
-Package suggested but not available for checking: ‘zenplots’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+* checking for file ‘grandR/DESCRIPTION’ ... OK
+...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+  ‘getting-started.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
 * DONE
-Status: 1 ERROR
+Status: 2 NOTEs
 
 
 
 
 
+```
+# Seurat
+
+<details>
+
+* Version: 5.0.1
+* GitHub: https://github.com/satijalab/seurat
+* Source code: https://github.com/cran/Seurat
+* Date/Publication: 2023-11-17 23:10:06 UTC
+* Number of recursive dependencies: 264
+
+Run `revdepcheck::cloud_details(, "Seurat")` for more info
+
+</details>
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/Seurat/new/Seurat.Rcheck’
+* using R version 4.3.1 (2023-06-16)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* R was compiled by
+    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
+    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
+* running under: Ubuntu 20.04.6 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘Seurat/DESCRIPTION’ ... OK
+...
+* checking for GNU extensions in Makefiles ... OK
+* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
+* checking use of PKG_*FLAGS in Makefiles ... OK
+* checking compiled code ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+  Running ‘testthat.R’
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/Seurat/old/Seurat.Rcheck’
+* using R version 4.3.1 (2023-06-16)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* R was compiled by
+    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
+    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
+* running under: Ubuntu 20.04.6 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘Seurat/DESCRIPTION’ ... OK
+...
+* checking for GNU extensions in Makefiles ... OK
+* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
+* checking use of PKG_*FLAGS in Makefiles ... OK
+* checking compiled code ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+  Running ‘testthat.R’
+* DONE
+Status: 3 NOTEs
+
+
+
+
+
+```
+# triptych
+
+<details>
+
+* Version: 0.1.2
+* GitHub: https://github.com/aijordan/triptych
+* Source code: https://github.com/cran/triptych
+* Date/Publication: 2023-10-03 16:30:02 UTC
+* Number of recursive dependencies: 64
+
+Run `revdepcheck::cloud_details(, "triptych")` for more info
+
+</details>
+
+## In both
+
+*   checking whether package ‘triptych’ can be installed ... ERROR
+    ```
+    Installation failed.
+    See ‘/tmp/workdir/triptych/new/triptych.Rcheck/00install.out��� for details.
+    ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘triptych’ ...
+** package ‘triptych’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+Error: C++20 standard requested but CXX20 is not defined
+* removing ‘/tmp/workdir/triptych/new/triptych.Rcheck/triptych’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘triptych’ ...
+** package ‘triptych’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+Error: C++20 standard requested but CXX20 is not defined
+* removing ‘/tmp/workdir/triptych/old/triptych.Rcheck/triptych’
+
+
 ```