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238 Open 7,482 Closed
238 Open 7,482 Closed
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Issues list

CellSelector selected more cells than visually selected in FeatureScatter bug Something isn't working
#9116 opened Jul 15, 2024 by denvercal1234GitHub
How to obtain the same clusters as when performing clustering on RNA GEX vs on loom's "spliced" in RNA Velocity analysis?
#9115 opened Jul 15, 2024 by denvercal1234GitHub
subscript out of bounds when trying to run PrepSCTFindMarkers() bug Something isn't working
#9112 opened Jul 14, 2024 by ChaptCarole
"Merge" seurat obj list (post-SCT, BPCells matrix based): Error in vctrs::vec_slice(): ! Can't subset elements past the end.
#9111 opened Jul 12, 2024 by winner0809
Error with FindTransferAnchors: Query assay provided is an SCTAssay with multiple different original umi assaysFALSE bug Something isn't working
#9110 opened Jul 12, 2024 by satkinson0115
Encounter "Error in .subscript.2ary(x, , j, drop = drop) : subscript out of bounds" when merging 3 SCTtransform Seurat objects bug Something isn't working
#9109 opened Jul 12, 2024 by pxh251
1
Error in VariableFeatures(): ! No variable features found in demultiplexing with hashtag oligos script
#9108 opened Jul 12, 2024 by adhisadi
Integrating samples from demultiplexing with hashtag oligos to other samples sequenced individually
#9107 opened Jul 12, 2024 by adhisadi
ScaleData + clustermq => hangs indefinitely bug Something isn't working
#9106 opened Jul 12, 2024 by nick-youngblut
Is AggregateExpression() function reflect harmony batch correction??
#9105 opened Jul 11, 2024 by ilovegreentea
RunICA error - DimReduc” object: rownames must be present in 'cell.embeddings bug Something isn't working
#9104 opened Jul 11, 2024 by daniel-spies
No anchors found when mapping annotations from reference to query datasets
#9103 opened Jul 11, 2024 by rcrueda
Seurat::LoadAkoya produced Error in data.frame(x = mtx[[xpos]], y = mtx[[ypos]], cell = rownames(x = mtx), : arguments imply differing number of rows: 0, 116335 bug Something isn't working
#9102 opened Jul 10, 2024 by denvercal1234GitHub
guide_legend problem when using SpatialPlot bug Something isn't working
#9101 opened Jul 10, 2024 by onmyojiyys
2
meta.method name (not itself) not actually used in FindConservedMarkers function bug Something isn't working
#9100 opened Jul 9, 2024 by qi-zheng-NCH
Seurat5 problem installation system command 'R' failed bug Something isn't working
#9099 opened Jul 9, 2024 by yuehcode
Error in IntegrateLayers(): ! None of the features provided are found in this assay
#9098 opened Jul 9, 2024 by IrohaShiro
1
Integration of Single-Cell RNA Data with Fixed RNA Data
#9097 opened Jul 9, 2024 by recervictory
Normalized count data
#9096 opened Jul 9, 2024 by aaliya1997
PrepSCTIntegration() errors
#9094 opened Jul 8, 2024 by Natafui
Error in FindSpatiallyVariableFeatures.default(object = data, spatial.location = spatial.location
#9092 opened Jul 8, 2024 by ankushs0128
Seurat::FindAllMarkers return nothing
#9091 opened Jul 8, 2024 by tomyputw
split layers generate same nFeature_RNA and nCount_RNA
#9090 opened Jul 6, 2024 by dfgao
Error with loading Vizgen mouse brain data from spatial vignette
#9089 opened Jul 5, 2024 by mabbasi6
1
Extracting the proportion of variance by confounding factors in latent.vars for DEA and using RNA/SCT Assay
#9088 opened Jul 5, 2024 by Rahul1711arora
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