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@navis-org

NAVis

Tools for Neuron Analysis & Visualization
README.md

We make tools for processing and analysing of neurobiological data.

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  1. navis navis Public

    Python library for analysis of neuroanatomical data.

    Python 79 30

  2. pymaid pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    Python 23 11

  3. skeletor skeletor Public

    Extraction of 3D skeletons from meshes.

    Python 197 25

  4. fafbseg-py fafbseg-py Public

    Tools to work with the FlyWire connectome. Fully interoperable with navis.

    Python 12 5

  5. navis-flybrains navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    Jupyter Notebook 6 2

  6. fastcore fastcore Public

    [WIP] Fast core functions for navis re-implemented in Cython.

    Jupyter Notebook 1 1

Repositories

Showing 10 of 16 repositories
  • navis Public

    Python library for analysis of neuroanatomical data.

    navis-org/navis’s past year of commit activity
    Python 79 GPL-3.0 30 30 11 Updated Jul 12, 2024
  • fafbseg-py Public

    Tools to work with the FlyWire connectome. Fully interoperable with navis.

    navis-org/fafbseg-py’s past year of commit activity
    Python 12 GPL-3.0 5 4 2 Updated Jun 14, 2024
  • navis-mousebrains Public

    Template brains and transforms for mouse brains

    navis-org/navis-mousebrains’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 12, 2024
  • octarine-navis-plugin Public

    Octarine plugin to visualize navis objects

    navis-org/octarine-navis-plugin’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 6, 2024
  • navis-flybrains Public

    Transforms for navis that enable mapping between different Drosophila template brains.

    navis-org/navis-flybrains’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 2 6 1 Updated Apr 16, 2024
  • pymaid Public

    Python library to interface with CATMAID servers. Fully interoperable with navis.

    navis-org/pymaid’s past year of commit activity
    Python 23 GPL-3.0 11 36 3 Updated Apr 12, 2024
  • skeletor Public

    Extraction of 3D skeletons from meshes.

    navis-org/skeletor’s past year of commit activity
    Python 197 GPL-3.0 25 27 0 Updated Apr 7, 2024
  • fastcore Public

    [WIP] Fast core functions for navis re-implemented in Cython.

    navis-org/fastcore’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 1 3 0 Updated Dec 2, 2023
  • sparse-cubes Public

    Marching cubes for sparse matrices

    navis-org/sparse-cubes’s past year of commit activity
    Python 4 GPL-3.0 1 1 0 Updated May 23, 2023
  • .github Public
    navis-org/.github’s past year of commit activity
    1 0 0 0 Updated Apr 6, 2023
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