Published October 18, 2019 | Version v1.25.0
Software Open

broadinstitute/viral-ngs: v1.25.0

Creators

  • 1. Broad Institute
  • 2. Broad Institute of MIT and Harvard
  • 3. MIT
  • 4. @broadinstitute
  • 5. Columbia University Medical Center
  • 6. Aalborg University
  • 7. @TIBHannover

Description

Upgrades:

  • Picard 2.20.5 -> 2.21.1
  • Cromwell 33.1 -> 47
  • dxWDL 0.72 -> v1.33
    • dx-docker replaced with native OS docker
    • dx download replaced with dxda
  • dx-toolkit v0.285.0 -> v0.288.0
  • all dx_instance_types in WDL runtimes to v2 DNAnexus instance types

Bugfixes:

  • krona failed when output file was on a different filesystem from TMPDIR
  • krona attempted to repeatedly reinstall itself due to version documentation mismatch

Files

broadinstitute/viral-ngs-v1.25.0.zip

Files (8.2 MB)

Name Size Download all
md5:e2e96bf78ef1b7e73fa48b1a423d474b
8.2 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/broadinstitute/viral-ngs/tree/v1.25.0 (URL)