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Tai K, Zhao R, Rameau A. Patient-Centered Equitable and Safe Artificial Intelligence in Otolaryngology-Head and Neck Surgery. Otolaryngol Head Neck Surg. 2024 Jun 29;. doi: 10.1002/ohn.881. [Epub ahead of print] PubMed PMID: 38943446; NIHMSID:NIHMS2006302.

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Park J, Wang J, Guan W, Gjesteby LA, Pollack D, Kamentsky L, Evans NB, Stirman J, Gu X, Zhao C, Marx S, Kim ME, Choi SW, Snyder M, Chavez D, Su-Arcaro C, Tian Y, Park CS, Zhang Q, Yun DH, Moukheiber M, Feng G, Yang XW, Keene CD, Hof PR, Ghosh SS, Frosch MP, Brattain LJ, Chung K. Integrated platform for multiscale molecular imaging and phenotyping of the human brain. Science. 2024 Jun 14;384(6701):eadh9979. doi: 10.1126/science.adh9979. Epub 2024 Jun 14. PubMed PMID: 38870291.

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Low DM, Rao V, Randolph G, Song PC, Ghosh SS. Identifying bias in models that detect vocal fold paralysis from audio recordings using explainable machine learning and clinician ratings. PLOS Digit Health. 2024 May;3(5):e0000516. doi: 10.1371/journal.pdig.0000516. eCollection 2024 May. PubMed PMID: 38814939; PubMed Central PMCID: PMC11139298.

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Rameau A, Tucker LH, Denham MW, Kang YJ, Choi N, Lachs M, Rosen TE, Stewart M, Czaja S, Golub JS. Voice Disorders and Hearing Loss May Be Additive Risk Factors for Depression in a National Cohort. Laryngoscope. 2024 May 28;. doi: 10.1002/lary.31536. [Epub ahead of print] PubMed PMID: 38804637; NIHMSID:NIHMS1995319.

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Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Dörig M, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Halchenko YO, Hannan AJ, Heinsfeld AS, Huber L, Hughes ME, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Meier ML, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira MM, Shaw TB, Sowman PF, Spitz G, Stewart AW, Ye X, Zhu JD, Narayanan A, Bollmann S. Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nat Methods. 2024 May;21(5):804-808. doi: 10.1038/s41592-023-02145-x. Epub 2024 Jan 8. PubMed PMID: 38191935; PubMed Central PMCID: PMC11180540.

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Srinivasan Y, Briano J, Czaja S, Lachs MS, Rosen AE, Stewart MG, Rameau A. Elective Surgery Trends and Outcomes of Nonagenarians and Centenarians in Otolaryngology-Head and Neck Surgery: A NSQIP Study. Laryngoscope. 2024 Apr 8;. doi: 10.1002/lary.31446. [Epub ahead of print] PubMed PMID: 38587164; NIHMSID:NIHMS1982546.

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Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, Calhoun VD, Castelli FM, Clement P, Cohen AL, Cohen-Adad J, D'Ambrosio S, de Hollander G, de la Iglesia-Vayá M, de la Vega A, Delorme A, Devinsky O, Draschkow D, Duff EP, DuPre E, Earl E, Esteban O, Feingold FW, Flandin G, Galassi A, Gallitto G, Ganz M, Gau R, Gholam J, Ghosh SS, Giacomel A, Gillman AG, Gleeson P, Gramfort A, Guay S, Guidali G, Halchenko YO, Handwerker DA, Hardcastle N, Herholz P, Hermes D, Honey CJ, Innis RB, Ioanas HI, Jahn A, Karakuzu A, Keator DB, Kiar G, Kincses B, Laird AR, Lau JC, Lazari A, Legarreta JH, Li A, Li X, Love BC, Lu H, Marcantoni E, Maumet C, Mazzamuto G, Meisler SL, Mikkelsen M, Mutsaerts H, Nichols TE, Nikolaidis A, Nilsonne G, Niso G, Norgaard M, Okell TW, Oostenveld R, Ort E, Park PJ, Pawlik M, Pernet CR, Pestilli F, Petr J, Phillips C, Poline JB, Pollonini L, Raamana PR, Ritter P, Rizzo G, Robbins KA, Rockhill AP, Rogers C, Rokem A, Rorden C, Routier A, Saborit-Torres JM, Salo T, Schirner M, Smith RE, Spisak T, Sprenger J, Swann NC, Szinte M, Takerkart S, Thirion B, Thomas AG, Torabian S, Varoquaux G, Voytek B, Welzel J, Wilson M, Yarkoni T, Gorgolewski KJ. The Past, Present, and Future of the Brain Imaging Data Structure (BIDS). ArXiv. 2024 Jan 9;. PubMed PMID: 37744469; PubMed Central PMCID: PMC10516110.

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Subash P, Gray A, Boswell M, Cohen SL, Garner R, Salehi S, Fisher C, Hobel S, Ghosh S, Halchenko Y, Dichter B, Poldrack RA, Markiewicz C, Hermes D, Delorme A, Makeig S, Behan B, Sparks A, Arnott SR, Wang Z, Magnotti J, Beauchamp MS, Pouratian N, Toga AW, Duncan D. A comparison of neuroelectrophysiology databases. Sci Data. 2023 Oct 19;10(1):719. doi: 10.1038/s41597-023-02614-0. Review. PubMed PMID: 37857685; PubMed Central PMCID: PMC10587056.

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Bloom PA, Pagliaccio D, Zhang J, Bauer CCC, Kyler M, Greene KD, Treves I, Morfini F, Durham K, Cherner R, Bajwa Z, Wool E, Olafsson V, Lee RF, Bidmead F, Cardona J, Kirshenbaum JS, Ghosh S, Hinds O, Wighton P, Galfalvy H, Simpson HB, Whitfield-Gabrieli S, Auerbach RP. Mindfulness-based real-time fMRI neurofeedback: a randomized controlled trial to optimize dosing for depressed adolescents. BMC Psychiatry. 2023 Oct 17;23(1):757. doi: 10.1186/s12888-023-05223-8. PubMed PMID: 37848857; PubMed Central PMCID: PMC10580563.

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Schabdach JM, Schmitt JE, Sotardi S, Vossough A, Andronikou S, Roberts TP, Huang H, Padmanabhan V, Ortiz-Rosa A, Gardner M, Covitz S, Bedford SA, Mandal AS, Chaiyachati BH, White SR, Bullmore E, Bethlehem RAI, Shinohara RT, Billot B, Iglesias JE, Ghosh S, Gur RE, Satterthwaite TD, Roalf D, Seidlitz J, Alexander-Bloch A. Brain Growth Charts for Quantitative Analysis of Pediatric Clinical Brain MRI Scans with Limited Imaging Pathology. Radiology. 2023 Oct;309(1):e230096. doi: 10.1148/radiol.230096. PubMed PMID: 37906015; PubMed Central PMCID: PMC10623207.

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Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Casas Moreno X, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Küpcü Yoldaş A, Kyoda K, le Tournoulx de la Villegeorges A, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, Swedlow JR. OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochem Cell Biol. 2023 Sep;160(3):223-251. doi: 10.1007/s00418-023-02209-1. Epub 2023 Jul 10. PubMed PMID: 37428210; PubMed Central PMCID: PMC10492740.

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Bélisle-Pipon JC, Ravitsky V, Bensoussan Y. Individuals and (Synthetic) Data Points: Using Value-Sensitive Design to Foster Ethical Deliberations on Epistemic Transitions. Am J Bioeth. 2023 Sep;23(9):69-72. doi: 10.1080/15265161.2023.2237436. PubMed PMID: 37647464; PubMed Central PMCID: PMC11278678.

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Zhao C, Jarecka D, Covitz S, Chen Y, Eickhoff SB, Fair DA, Franco AR, Halchenko YO, Hendrickson TJ, Hoffstaedter F, Houghton A, Kiar G, Macdonald A, Mehta K, Milham MP, Salo T, Hanke M, Ghosh SS, Cieslak M, Satterthwaite TD. A reproducible and generalizable software workflow for analysis of large-scale neuroimaging data collections using BIDS Apps. bioRxiv. 2023 Aug 18;. doi: 10.1101/2023.08.16.552472. PubMed PMID: 37645999; PubMed Central PMCID: PMC10461987.

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Queder N, Tien VB, Abraham SA, Urchs SGW, Helmer KG, Chaplin D, van Erp TGM, Kennedy DN, Poline JB, Grethe JS, Ghosh SS, Keator DB. NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query. Front Neuroinform. 2023;17:1174156. doi: 10.3389/fninf.2023.1174156. eCollection 2023. PubMed PMID: 37533796; PubMed Central PMCID: PMC10392125.

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Kiar G, Clucas J, Feczko E, Goncalves M, Jarecka D, Markiewicz CJ, Halchenko YO, Hermosillo R, Li X, Miranda-Dominguez O, Ghosh S, Poldrack RA, Satterthwaite TD, Milham MP, Fair D. Align with the NMIND consortium for better neuroimaging. Nat Hum Behav. 2023 Jul;7(7):1027-1028. doi: 10.1038/s41562-023-01647-0. PubMed PMID: 37386112; PubMed Central PMCID: PMC11024722.

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Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, Mukamel E, Ng L, Osumi-Sutherland D, Peng H, Ray PL, Sanchez R, Regev A, Ropelewski A, Scheuermann RH, Tan SZK, Thompson CL, Tickle T, Tilgner H, Varghese M, Wester B, White O, Zeng H, Aevermann B, Allemang D, Ament S, Athey TL, Baker C, Baker KS, Baker PM, Bandrowski A, Banerjee S, Bishwakarma P, Carr A, Chen M, Choudhury R, Cool J, Creasy H, D'Orazi F, Degatano K, Dichter B, Ding SL, Dolbeare T, Ecker JR, Fang R, Fillion-Robin JC, Fliss TP, Gee J, Gillespie T, Gouwens N, Zhang GQ, Halchenko YO, Harris NL, Herb BR, Hintiryan H, Hood G, Horvath S, Huo B, Jarecka D, Jiang S, Khajouei F, Kiernan EA, Kir H, Kruse L, Lee C, Lelieveldt B, Li Y, Liu H, Liu L, Markuhar A, Mathews J, Mathews KL, Mezias C, Miller MI, Mollenkopf T, Mufti S, Mungall CJ, Orvis J, Puchades MA, Qu L, Receveur JP, Ren B, Sjoquist N, Staats B, Tward D, van Velthoven CTJ, Wang Q, Xie F, Xu H, Yao Z, Yun Z, Zhang YR, Zheng WJ, Zingg B. A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLoS Biol. 2023 Jun;21(6):e3002133. doi: 10.1371/journal.pbio.3002133. eCollection 2023 Jun. PubMed PMID: 37390046; PubMed Central PMCID: PMC10313015.

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Talkar T, Low DM, Simpkin AJ, Ghosh S, O'Keeffe DT, Quatieri TF. Dissociating COVID-19 from other respiratory infections based on acoustic, motor coordination, and phonemic patterns. Sci Rep. 2023 Jan 28;13(1):1567. doi: 10.1038/s41598-023-27934-4. PubMed PMID: 36709368; PubMed Central PMCID: PMC9884222.

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Uchida M, Bukhari Q, DiSalvo M, Green A, Serra G, Hutt Vater C, Ghosh SS, Faraone SV, Gabrieli JDE, Biederman J. Can machine learning identify childhood characteristics that predict future development of bipolar disorder a decade later?. J Psychiatr Res. 2022 Dec;156:261-267. doi: 10.1016/j.jpsychires.2022.09.051. Epub 2022 Oct 13. PubMed PMID: 36274531; PubMed Central PMCID: PMC9999264.

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Mahmood U, Fu Z, Ghosh S, Calhoun V, Plis S. Through the looking glass: Deep interpretable dynamic directed connectivity in resting fMRI. Neuroimage. 2022 Dec 1;264:119737. doi: 10.1016/j.neuroimage.2022.119737. Epub 2022 Nov 7. PubMed PMID: 36356823; PubMed Central PMCID: PMC9844250.

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Ciric R, Thompson WH, Lorenz R, Goncalves M, MacNicol EE, Markiewicz CJ, Halchenko YO, Ghosh SS, Gorgolewski KJ, Poldrack RA, Esteban O. TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models. Nat Methods. 2022 Dec;19(12):1568-1571. doi: 10.1038/s41592-022-01681-2. Epub 2022 Dec 1. PubMed PMID: 36456786; PubMed Central PMCID: PMC9718663.

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Rübel O, Tritt A, Ly R, Dichter BK, Ghosh S, Niu L, Baker P, Soltesz I, Ng L, Svoboda K, Frank L, Bouchard KE. The Neurodata Without Borders ecosystem for neurophysiological data science. Elife. 2022 Oct 4;11. doi: 10.7554/eLife.78362. PubMed PMID: 36193886; PubMed Central PMCID: PMC9531949.

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Boaro A, Kaczmarzyk JR, Kavouridis VK, Harary M, Mammi M, Dawood H, Shea A, Cho EY, Juvekar P, Noh T, Rana A, Ghosh S, Arnaout O. Deep neural networks allow expert-level brain meningioma segmentation and present potential for improvement of clinical practice. Sci Rep. 2022 Sep 14;12(1):15462. doi: 10.1038/s41598-022-19356-5. PubMed PMID: 36104424; PubMed Central PMCID: PMC9474556.

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de la Vega A, Rocca R, Blair RW, Markiewicz CJ, Mentch J, Kent JD, Herholz P, Ghosh SS, Poldrack RA, Yarkoni T. Neuroscout, a unified platform for generalizable and reproducible fMRI research. Elife. 2022 Aug 30;11. doi: 10.7554/eLife.79277. PubMed PMID: 36040302; PubMed Central PMCID: PMC9489206.

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Bourget MH, Kamentsky L, Ghosh SS, Mazzamuto G, Lazari A, Markiewicz CJ, Oostenveld R, Niso G, Halchenko YO, Lipp I, Takerkart S, Toussaint PJ, Khan AR, Nilsonne G, Castelli FM, Cohen-Adad J. Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data. Front Neurosci. 2022;16:871228. doi: 10.3389/fnins.2022.871228. eCollection 2022. PubMed PMID: 35516811; PubMed Central PMCID: PMC9063519.

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Poline JB, Kennedy DN, Sommer FT, Ascoli GA, Van Essen DC, Ferguson AR, Grethe JS, Hawrylycz MJ, Thompson PM, Poldrack RA, Ghosh SS, Keator DB, Athey TL, Vogelstein JT, Mayberg HS, Martone ME. Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. Neuroinformatics. 2022 Apr;20(2):507-512. doi: 10.1007/s12021-021-09557-0. Epub 2022 Jan 21. PubMed PMID: 35061216; PubMed Central PMCID: PMC9300762.

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Sitek KR, Calabrese E, Johnson GA, Ghosh SS, Chandrasekaran B. Structural Connectivity of Human Inferior Colliculus Subdivisions Using in vivo and post mortem Diffusion MRI Tractography. Front Neurosci. 2022;16:751595. doi: 10.3389/fnins.2022.751595. eCollection 2022. PubMed PMID: 35392412; PubMed Central PMCID: PMC8981148.

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Abrams MB, Bjaalie JG, Das S, Egan GF, Ghosh SS, Goscinski WJ, Grethe JS, Kotaleski JH, Ho ETW, Kennedy DN, Lanyon LJ, Leergaard TB, Mayberg HS, Milanesi L, Mouček R, Poline JB, Roy PK, Strother SC, Tang TB, Tiesinga P, Wachtler T, Wójcik DK, Martone ME. A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics. 2022 Jan;20(1):25-36. doi: 10.1007/s12021-020-09509-0. Epub 2021 Jan 27. Review. PubMed PMID: 33506383; PubMed Central PMCID: PMC9036053.

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Abrams MB, Bjaalie JG, Das S, Egan GF, Ghosh SS, Goscinski WJ, Grethe JS, Kotaleski JH, Ho ETW, Kennedy DN, Lanyon LJ, Leergaard TB, Mayberg HS, Milanesi L, Mouček R, Poline JB, Roy PK, Strother SC, Tang TB, Tiesinga P, Wachtler T, Wójcik DK, Martone ME. Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics. 2022 Jan;20(1):37-38. doi: 10.1007/s12021-021-09522-x. PubMed PMID: 33851344; PubMed Central PMCID: PMC9629304.

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Klein A, Clucas J, Krishnakumar A, Ghosh SS, Van Auken W, Thonet B, Sabram I, Acuna N, Keshavan A, Rossiter H, Xiao Y, Semenuta S, Badioli A, Konishcheva K, Abraham SA, Alexander LM, Merikangas KR, Swendsen J, Lindner AB, Milham MP. Remote Digital Psychiatry for Mobile Mental Health Assessment and Therapy: MindLogger Platform Development Study. J Med Internet Res. 2021 Nov 11;23(11):e22369. doi: 10.2196/22369. PubMed PMID: 34762054; PubMed Central PMCID: PMC8663601.

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Low DM, Zuromski KL, Kessler D, Ghosh SS, Nock M, Dempsey W. It's quality and quantity: the effect of the amount of comments on online suicidal posts. Proc Conf Empir Methods Nat Lang Process. 2021 Nov;2021:95-103. doi: 10.18653/v1/2021.cinlp-1.8. PubMed PMID: 35224567; PubMed Central PMCID: PMC8880842.

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A multimodal cell census and atlas of the mammalian primary motor cortex. Nature. 2021 Oct;598(7879):86-102. doi: 10.1038/s41586-021-03950-0. Epub 2021 Oct 6. PubMed PMID: 34616075; PubMed Central PMCID: PMC8494634.

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Halchenko Y, Meyer K, Poldrack B, Solanky D, Wagner A, Gors J, MacFarlane D, Pustina D, Sochat V, Ghosh S, Mönch C, Markiewicz C, Waite L, Shlyakhter I, de la Vega A, Hayashi S, Häusler C, Poline J, Kadelka T, Skytén K, Jarecka D, Kennedy D, Strauss T, Cieslak M, Vavra P, Ioanas H, Schneider R, Pflüger M, Haxby J, Eickhoff S, Hanke M. DataLad: distributed system for joint management of code, data, and their relationship. Journal of Open Source Software. 2021 July; 6(63):3262-. doi: 10.21105/joss.03262.

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Gau R, Noble S, Heuer K, Bottenhorn KL, Bilgin IP, Yang YF, Huntenburg JM, Bayer JMM, Bethlehem RAI, Rhoads SA, Vogelbacher C, Borghesani V, Levitis E, Wang HT, Van Den Bossche S, Kobeleva X, Legarreta JH, Guay S, Atay SM, Varoquaux GP, Huijser DC, Sandström MS, Herholz P, Nastase SA, Badhwar A, Dumas G, Schwab S, Moia S, Dayan M, Bassil Y, Brooks PP, Mancini M, Shine JM, O'Connor D, Xie X, Poggiali D, Friedrich P, Heinsfeld AS, Riedl L, Toro R, Caballero-Gaudes C, Eklund A, Garner KG, Nolan CR, Demeter DV, Barrios FA, Merchant JS, McDevitt EA, Oostenveld R, Craddock RC, Rokem A, Doyle A, Ghosh SS, Nikolaidis A, Stanley OW, Uruñuela E. Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Neuron. 2021 Jun 2;109(11):1769-1775. doi: 10.1016/j.neuron.2021.04.001. Epub 2021 Apr 30. PubMed PMID: 33932337; PubMed Central PMCID: PMC9153215.

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Lee YJ, Guell X, Hubbard NA, Siless V, Frosch IR, Goncalves M, Lo N, Nair A, Ghosh SS, Hofmann SG, Auerbach RP, Pizzagalli DA, Yendiki A, Gabrieli JDE, Whitfield-Gabrieli S, Anteraper SA. Functional Alterations in Cerebellar Functional Connectivity in Anxiety Disorders. Cerebellum. 2021 Jun;20(3):392-401. doi: 10.1007/s12311-020-01213-8. Epub 2020 Nov 18. PubMed PMID: 33210245; PubMed Central PMCID: PMC8213597.

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Bannier E, Barker G, Borghesani V, Broeckx N, Clement P, Emblem KE, Ghosh S, Glerean E, Gorgolewski KJ, Havu M, Halchenko YO, Herholz P, Hespel A, Heunis S, Hu Y, Hu CP, Huijser D, de la Iglesia Vayá M, Jancalek R, Katsaros VK, Kieseler ML, Maumet C, Moreau CA, Mutsaerts HJ, Oostenveld R, Ozturk-Isik E, Pascual Leone Espinosa N, Pellman J, Pernet CR, Pizzini FB, Trbalić AŠ, Toussaint PJ, Visconti di Oleggio Castello M, Wang F, Wang C, Zhu H. The Open Brain Consent: Informing research participants and obtaining consent to share brain imaging data. Hum Brain Mapp. 2021 May;42(7):1945-1951. doi: 10.1002/hbm.25351. Epub 2021 Feb 1. PubMed PMID: 33522661; PubMed Central PMCID: PMC8046140.

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Low DM, Rumker L, Talkar T, Torous J, Cecchi G, Ghosh SS. Natural Language Processing Reveals Vulnerable Mental Health Support Groups and Heightened Health Anxiety on Reddit During COVID-19: Observational Study. J Med Internet Res. 2020 Oct 12;22(10):e22635. doi: 10.2196/22635. PubMed PMID: 32936777; PubMed Central PMCID: PMC7575341.

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Charles AS, Falk B, Turner N, Pereira TD, Tward D, Pedigo BD, Chung J, Burns R, Ghosh SS, Kebschull JM, Silversmith W, Vogelstein JT. Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics. Annu Rev Neurosci. 2020 Jul 8;43:441-464. doi: 10.1146/annurev-neuro-100119-110036. Epub 2020 Apr 13. Review. PubMed PMID: 32283996; PubMed Central PMCID: PMC9119703.

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Esteban O, Ciric R, Finc K, Blair RW, Markiewicz CJ, Moodie CA, Kent JD, Goncalves M, DuPre E, Gomez DEP, Ye Z, Salo T, Valabregue R, Amlien IK, Liem F, Jacoby N, Stojić H, Cieslak M, Urchs S, Halchenko YO, Ghosh SS, De La Vega A, Yarkoni T, Wright J, Thompson WH, Poldrack RA, Gorgolewski KJ. Analysis of task-based functional MRI data preprocessed with fMRIPrep. Nat Protoc. 2020 Jul;15(7):2186-2202. doi: 10.1038/s41596-020-0327-3. Epub 2020 Jun 8. PubMed PMID: 32514178; PubMed Central PMCID: PMC7404612.

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Hung Y, Uchida M, Gaillard SL, Woodworth H, Kelberman C, Capella J, Kadlec K, Goncalves M, Ghosh S, Yendiki A, Chai XJ, Hirshfeld-Becker DR, Whitfield-Gabrieli S, Gabrieli JDE, Biederman J. Cingulum-Callosal white-matter microstructure associated with emotional dysregulation in children: A diffusion tensor imaging study. Neuroimage Clin. 2020;27:102266. doi: 10.1016/j.nicl.2020.102266. Epub 2020 Apr 25. PubMed PMID: 32408198; PubMed Central PMCID: PMC7218214.

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Siless V, Hubbard NA, Jones R, Wang J, Lo N, Bauer CCC, Goncalves M, Frosch I, Norton D, Vergara G, Conroy K, De Souza FV, Rosso IM, Wickham AH, Cosby EA, Pinaire M, Hirshfeld-Becker D, Pizzagalli DA, Henin A, Hofmann SG, Auerbach RP, Ghosh S, Gabrieli J, Whitfield-Gabrieli S, Yendiki A. Image acquisition and quality assurance in the Boston Adolescent Neuroimaging of Depression and Anxiety study. Neuroimage Clin. 2020;26:102242. doi: 10.1016/j.nicl.2020.102242. Epub 2020 Mar 19. PubMed PMID: 32339824; PubMed Central PMCID: PMC7184183.

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Hubbard NA, Siless V, Frosch IR, Goncalves M, Lo N, Wang J, Bauer CCC, Conroy K, Cosby E, Hay A, Jones R, Pinaire M, Vaz De Souza F, Vergara G, Ghosh S, Henin A, Hirshfeld-Becker DR, Hofmann SG, Rosso IM, Auerbach RP, Pizzagalli DA, Yendiki A, Gabrieli JDE, Whitfield-Gabrieli S. Brain function and clinical characterization in the Boston adolescent neuroimaging of depression and anxiety study. Neuroimage Clin. 2020;27:102240. doi: 10.1016/j.nicl.2020.102240. Epub 2020 Mar 12. PubMed PMID: 32361633; PubMed Central PMCID: PMC7199015.

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Okano K, Bauer CCC, Ghosh SS, Lee YJ, Melero H, de Los Angeles C, Nestor PG, Del Re EC, Northoff G, Whitfield-Gabrieli S, Niznikiewicz MA. Real-time fMRI feedback impacts brain activation, results in auditory hallucinations reduction: Part 1: Superior temporal gyrus -Preliminary evidence. Psychiatry Res. 2020 Feb 10;286:112862. doi: 10.1016/j.psychres.2020.112862. [Epub ahead of print] PubMed PMID: 32113035; PubMed Central PMCID: PMC7808413.

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Guell X, Anteraper SA, Ghosh SS, Gabrieli JDE, Schmahmann JD. Neurodevelopmental and Psychiatric Symptoms in Patients with a Cyst Compressing the Cerebellum: an Ongoing Enigma. Cerebellum. 2020 Feb;19(1):16-29. doi: 10.1007/s12311-019-01050-4. Review. PubMed PMID: 31321675; PubMed Central PMCID: PMC6984000.

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Low DM, Bentley KH, Ghosh SS. Automated assessment of psychiatric disorders using speech: A systematic review. Laryngoscope Investig Otolaryngol. 2020 Feb;5(1):96-116. doi: 10.1002/lio2.354. eCollection 2020 Feb. Review. PubMed PMID: 32128436; PubMed Central PMCID: PMC7042657.

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Bauer CCC, Okano K, Ghosh SS, Lee YJ, Melero H, Angeles CL, Nestor PG, Del Re EC, Northoff G, Niznikiewicz MA, Whitfield-Gabrieli S. Real-time fMRI neurofeedback reduces auditory hallucinations and modulates resting state connectivity of involved brain regions: Part 2: Default mode network -preliminary evidence. Psychiatry Res. 2020 Feb;284:112770. doi: 10.1016/j.psychres.2020.112770. Epub 2020 Jan 14. PubMed PMID: 32004893; PubMed Central PMCID: PMC7046150.

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Wagley N, Perrachione TK, Ostrovskaya I, Ghosh SS, Saxler PK, Lymberis J, Wexler K, Gabrieli JDE, Kovelman I. Persistent Neurobehavioral Markers of Developmental Morphosyntax Errors in Adults. J Speech Lang Hear Res. 2019 Dec 18;62(12):4497-4508. doi: 10.1044/2019_JSLHR-19-00154. Print 2019 Dec 18. PubMed PMID: 31825709; PubMed Central PMCID: PMC7201328.

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Quevedo K, Liu G, Teoh JY, Ghosh S, Zeffiro T, Ahrweiler N, Zhang N, Wedan R, Oh S, Guercio G, Paret C. Neurofeedback and neuroplasticity of visual self-processing in depressed and healthy adolescents: A preliminary study. Dev Cogn Neurosci. 2019 Dec;40:100707. doi: 10.1016/j.dcn.2019.100707. Epub 2019 Sep 11. PubMed PMID: 31733523; PubMed Central PMCID: PMC6974905.

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McClure P, Rho N, Lee JA, Kaczmarzyk JR, Zheng CY, Ghosh SS, Nielson DM, Thomas AG, Bandettini P, Pereira F. Knowing What You Know in Brain Segmentation Using Bayesian Deep Neural Networks. Front Neuroinform. 2019;13:67. doi: 10.3389/fninf.2019.00067. eCollection 2019. PubMed PMID: 31749693; PubMed Central PMCID: PMC6843052.

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Sitek KR, Gulban OF, Calabrese E, Johnson GA, Lage-Castellanos A, Moerel M, Ghosh SS, De Martino F. Mapping the human subcortical auditory system using histology, postmortem MRI and in vivo MRI at 7T. Elife. 2019 Aug 1;8. doi: 10.7554/eLife.48932. PubMed PMID: 31368891; PubMed Central PMCID: PMC6707786.

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Kennedy DN, Abraham SA, Bates JF, Crowley A, Ghosh S, Gillespie T, Goncalves M, Grethe JS, Halchenko YO, Hanke M, Haselgrove C, Hodge SM, Jarecka D, Kaczmarzyk J, Keator DB, Meyer K, Martone ME, Padhy S, Poline JB, Preuss N, Sincomb T, Travers M. Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging. Front Neuroinform. 2019;13:1. doi: 10.3389/fninf.2019.00001. eCollection 2019. PubMed PMID: 30792636; PubMed Central PMCID: PMC6374302.