About
Articles by Vijay
Activity
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We are proud to announce we’re leading the Series B round for Saronic Technologies. In less than two years, Saronic has turned unmanned surface…
We are proud to announce we’re leading the Series B round for Saronic Technologies. In less than two years, Saronic has turned unmanned surface…
Liked by Vijay Pande, PhD
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Photosynthetic light harvesting is the ultimate tech moat. Which is a fancy way of saying: "Wow, isn't photosynthesis incredible?" Responsible for…
Photosynthetic light harvesting is the ultimate tech moat. Which is a fancy way of saying: "Wow, isn't photosynthesis incredible?" Responsible for…
Liked by Vijay Pande, PhD
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I have to do a better job of saying that what we’re building at Ravida is extremely difficult and will require a lot of sheer will and effort to pull…
I have to do a better job of saying that what we’re building at Ravida is extremely difficult and will require a lot of sheer will and effort to pull…
Liked by Vijay Pande, PhD
Experience & Education
Patents
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Method for rapidly approximating similarities
Issued US US 8706427 B2
Methods and algorithms are presented that implement linear algebraic techniques for rapidly estimating chemical similarities for several popular measures. The methods of the present invention reflect source similarity measures for both Tanimoto calculation and rank ordering. After a precalculation step on a database, the methods of the present invention afford several orders of magnitude of speedup in database screening. The present invention also provides an asymptotic speedup for large…
Methods and algorithms are presented that implement linear algebraic techniques for rapidly estimating chemical similarities for several popular measures. The methods of the present invention reflect source similarity measures for both Tanimoto calculation and rank ordering. After a precalculation step on a database, the methods of the present invention afford several orders of magnitude of speedup in database screening. The present invention also provides an asymptotic speedup for large similarity matrix construction problems, reducing the number of conventional slow similarity evaluations required from quadratic to linear scaling.
Other inventorsSee patent -
Accelerated molecular dynamics of proteins and other biomolecules
Issued US WO 2009151696 A3
Embodiments herein relate to the field of computational biochemistry, in particular to accelerated molecular dynamics of proteins and other biomolecules. Various embodiments disclosed herein include methods, systems, and apparatus for determining the state, for example the kinetics or thermodynamics, of a biomolecule system. In some embodiments, the methods include partitioning the system's degrees of freedom into a subspace and a subspace complement according to frequency using Normal Mode…
Embodiments herein relate to the field of computational biochemistry, in particular to accelerated molecular dynamics of proteins and other biomolecules. Various embodiments disclosed herein include methods, systems, and apparatus for determining the state, for example the kinetics or thermodynamics, of a biomolecule system. In some embodiments, the methods include partitioning the system's degrees of freedom into a subspace and a subspace complement according to frequency using Normal Mode Analysis (NMA), determining a harmonic approximation to the system around an initial equilibrium structure using a Mass Reweighted Hessian (MRH) of a biomolecular force field, using the partitioning to construct a damping matrix for the Langevin equation that overdamps and propagates high frequency modes using Brownian dynamics, propagating the low frequency modes using full Langevin dynamics, and accelerating the Brownian dynamics on the high frequency modes using an energy minimization. A coarse-grained normal mode analysis (CNMA) is also presented that enables application of this approach to very large proteins and long timescales.
Other inventorsSee patent
Honors & Awards
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Delano Award for Computational Biosciences
American Society for Biochemistry and Molecular Biology
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Mentoring Award, Stanford University Postdoctoral Association
Stanford University Postdoctoral Association
“In recognition of his excellent mentoring of postdocs."
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Michael and Kate Bárány Award for Young Investigators
Biophysical Society
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Thomas Kuhn Paradigm Shift Award
American Chemical Society
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Fellow
American Physical Society
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Netxplorateur of the Year
Netxplorateur
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Guinness World Record, Folding@home First to a Petaflop
Guinness
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Irving Sigal Young Investigator Award
Protein Society
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Technovators Award
Global Indus
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TechReview TR 100
MIT TechReview
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National Science Foundation Graduate Fellowship
National Science Foundation
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Fourth place, Westinghouse Science Talent Search Scholarship
Westinghouse Science
Languages
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English
Native or bilingual proficiency
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French
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More activity by Vijay
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I am starting a blog about the human side of biotech! While there are many awesome technical blogs that cover the latest in data, AI and modeling, I…
I am starting a blog about the human side of biotech! While there are many awesome technical blogs that cover the latest in data, AI and modeling, I…
Liked by Vijay Pande, PhD
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I have a question for everyone. In the last year and a half, I published 65 posts to help founders create and build breakthrough technology…
I have a question for everyone. In the last year and a half, I published 65 posts to help founders create and build breakthrough technology…
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Our team is grateful to all the clinicians and healthcare professionals who helped us to complete this pivotal study. We look forward to presenting…
Our team is grateful to all the clinicians and healthcare professionals who helped us to complete this pivotal study. We look forward to presenting…
Liked by Vijay Pande, PhD
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"Are we trying to replace something we don't understand well like the brain with something else we don't understand well like AI?" Join us and Surya…
"Are we trying to replace something we don't understand well like the brain with something else we don't understand well like AI?" Join us and Surya…
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Want to learn more about Generative AI applications in revenue cycle? Join us for a webinar with Stanford Health Care on Thurs at 12 CT! Registration…
Want to learn more about Generative AI applications in revenue cycle? Join us for a webinar with Stanford Health Care on Thurs at 12 CT! Registration…
Liked by Vijay Pande, PhD
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Zus Health thinking caps on; deep thoughts flowing at Jonathan Bush’s Maine offsite. Inspiring to see how fluid data will fuel fundamental…
Zus Health thinking caps on; deep thoughts flowing at Jonathan Bush’s Maine offsite. Inspiring to see how fluid data will fuel fundamental…
Liked by Vijay Pande, PhD
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It’s often said that necessity is the mother of invention, and I believe our rural communities might be our earliest adopters of AI in healthcare…
It’s often said that necessity is the mother of invention, and I believe our rural communities might be our earliest adopters of AI in healthcare…
Liked by Vijay Pande, PhD
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Dear LinkedIn Friends, Again this year, I'm riding 100 miles in the American Cancer Society's Bikes Battling Cancer ride. I'd appreciate any…
Dear LinkedIn Friends, Again this year, I'm riding 100 miles in the American Cancer Society's Bikes Battling Cancer ride. I'd appreciate any…
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My book on mathematical incompleteness is coming out soon! It's my middle life crisis project for 2 years worth of weekends Revisited my love of…
My book on mathematical incompleteness is coming out soon! It's my middle life crisis project for 2 years worth of weekends Revisited my love of…
Liked by Vijay Pande, PhD
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Since our very early days, when speaking with physicians - we consistently heard that the best drug for treatment of hyperphosphatrmia is the one…
Since our very early days, when speaking with physicians - we consistently heard that the best drug for treatment of hyperphosphatrmia is the one…
Liked by Vijay Pande, PhD
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Great spending time contemplating future frontiers and inflections with you Mathai Mammen, M.D., Ph.D. I’ve been fortunate to work with amazing…
Great spending time contemplating future frontiers and inflections with you Mathai Mammen, M.D., Ph.D. I’ve been fortunate to work with amazing…
Liked by Vijay Pande, PhD
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What an honor to kick off the scientific program of the #RICT2024 meeting in lovely #Bordeaux. Great to talk science and entrepreneurship with…
What an honor to kick off the scientific program of the #RICT2024 meeting in lovely #Bordeaux. Great to talk science and entrepreneurship with…
Liked by Vijay Pande, PhD
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Exciting approval of the 3rd monoclonal antibody treatment for Alzheimer's. Donanemab slows cognitive decline when given at the onset of symptoms…
Exciting approval of the 3rd monoclonal antibody treatment for Alzheimer's. Donanemab slows cognitive decline when given at the onset of symptoms…
Liked by Vijay Pande, PhD
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