San Diego, California, United States
Contact Info
810 followers
500+ connections
About
Activity
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A Multilingual Cell Ontology based on Wikidata As academics, we often find resources available only in English. While a common language is…
A Multilingual Cell Ontology based on Wikidata As academics, we often find resources available only in English. While a common language is…
Liked by Amarnath Gupta
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Two LLMs can't stop saying goodbye because AI does not understand accomplishment. A main difference between humans and AI is motivation which is…
Two LLMs can't stop saying goodbye because AI does not understand accomplishment. A main difference between humans and AI is motivation which is…
Liked by Amarnath Gupta
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Well, this video made me 🤯 Sun-dried tomatoes are ACTUALLY sun-dried, in dedicated fields, in Italy! What are marketed as ‘sun-dried tomatoes’ in…
Well, this video made me 🤯 Sun-dried tomatoes are ACTUALLY sun-dried, in dedicated fields, in Italy! What are marketed as ‘sun-dried tomatoes’ in…
Liked by Amarnath Gupta
Experience & Education
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UC San Diego
View Amarnath’s full experience
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Publications
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BiologicalNetworks: visualization and analysis tool for systems biology
Nucl. Acids Res.
BiologicalNetworks server provides visualization, analysis services and an information management framework over PathSys. The server allows easy retrieval, construction and visualization of complex biological networks, including genome-scale integrated networks of protein–protein, protein–DNA and genetic interactions.
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Patents
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Persistent archives
US 7,349,915
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Query optimization for visual information retrieval system
US 5,913,205
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Similarity engine for content-based retrieval of images
US 5,893,095
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Threshold-based comparison
US 5,915,250
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Visual image database search engine which allows for different schema
US 5,911,139
Projects
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RIDIR - system for integration of heterogeneous text-centric data
- Present
This project utilizes the AWESOME data platform to develop techniques for analyzing and integrating unstructured and semi-structured text heavy data. Currently, its application domain is social science data including social media, news and legal documents.
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AWESOME - An Analytical Workbench for Exploration of SOcial MEdia
- Present
AWESOME is a data exploration system being developed as a polystore solution to enable heterogeneous analytics on heterogeneous data
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Monarch Initiative
The Monarch Initiative aims to provide easy-to-use tools and services to enable navigation of model systems data by semantically aggregating this data and making it queryable based on a number of facets, such as phenotypic similarity, network analysis, gene expression and function, and genomics.
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Neuroscience Information Framework
The Neuroscience Information Framework (NIF) helps researchers, clinicians and students find and utilize neuroscience related resources - enabling discovery and access to a diverse collection of research data and literature, contained in databases and structured web resources (i.e. the hidden web). NIF provides access to more than 6000 resources and 200 databases, making NIF the largest source of neuroscience resources and information on the web.
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Wellderly Project at Scripps Translational Science Institute
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See projectDesign of a semantically aware, high performance genomic information system
More activity by Amarnath
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#ICYMI SDSC and the University of Utah have announced a national-scale pilot project aimed at a service ecosystem to make access to and use of…
#ICYMI SDSC and the University of Utah have announced a national-scale pilot project aimed at a service ecosystem to make access to and use of…
Liked by Amarnath Gupta
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A new school on the general campus of UC San Diego in 25 years, a new beginning to keep up with the mission and the ambition to cultivate the…
A new school on the general campus of UC San Diego in 25 years, a new beginning to keep up with the mission and the ambition to cultivate the…
Liked by Amarnath Gupta
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I just spent one and a half months in Southern Italy and am already missing the food environment. One example- the very inexpensive, and high quality…
I just spent one and a half months in Southern Italy and am already missing the food environment. One example- the very inexpensive, and high quality…
Liked by Amarnath Gupta
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Researchers from Google's DeepMind, Jigsaw, and Google.org units are warning us in a paper that Generative AI is now a significant danger to the…
Researchers from Google's DeepMind, Jigsaw, and Google.org units are warning us in a paper that Generative AI is now a significant danger to the…
Liked by Amarnath Gupta
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There is a big difference between being forced to work long hours and choosing to work hard (possibly with motivational support from an advisor) for…
There is a big difference between being forced to work long hours and choosing to work hard (possibly with motivational support from an advisor) for…
Liked by Amarnath Gupta
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"Just finished UC San Diego's 'Introduction to Big Data' course on Coursera. There's so much to explore in this fascinating field! 📈 Thankful for…
"Just finished UC San Diego's 'Introduction to Big Data' course on Coursera. There's so much to explore in this fascinating field! 📈 Thankful for…
Liked by Amarnath Gupta
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Mahidhar Tatineni has been named the SDSC 2024 Pi Person of the Year! This award, first bestowed to an SDSC researcher in 2013, recognizes an…
Mahidhar Tatineni has been named the SDSC 2024 Pi Person of the Year! This award, first bestowed to an SDSC researcher in 2013, recognizes an…
Liked by Amarnath Gupta
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Congratulations Vaaruni Desai, Yinglan (Elaine) Chi, Jon Stephens on the acceptance of your paper on extracting Recipe Knowledge Graphs via…
Congratulations Vaaruni Desai, Yinglan (Elaine) Chi, Jon Stephens on the acceptance of your paper on extracting Recipe Knowledge Graphs via…
Shared by Amarnath Gupta
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Jina AI just released a multilingual reranker model for RAG and retrieval. It's quite efficient, and performs well for English and beyond. Sadly, it…
Jina AI just released a multilingual reranker model for RAG and retrieval. It's quite efficient, and performs well for English and beyond. Sadly, it…
Liked by Amarnath Gupta
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It is an immense pleasure and delight to welcome Prof. Rintu Banerjee as the new Deputy Director of Indian Institute of Technology, Kharagpur. Prof…
It is an immense pleasure and delight to welcome Prof. Rintu Banerjee as the new Deputy Director of Indian Institute of Technology, Kharagpur. Prof…
Liked by Amarnath Gupta
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