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3 votes
1 answer
656 views

Overlapping two gene sets ,finding their overlap significance and plotting them

(Fig. 3a, b, Extended Data Fig. 3a, b and Supplementary Table 1). After 48 h, more than one-third of the transcriptome was differentially expressed (>5,000 genes; 405 genes encoding for proteins in ...
PesKchan's user avatar
  • 962
0 votes
1 answer
782 views

Why in my triple venn diagram, the circles with no overlap, isolated from other circles in R?

Why my circles with no overlap isolated from others? I want to show there is no overlap between them, but the triple shape of venn diagram completely have changed with mix of two circles and one. I ...
Morteza Razavi's user avatar
0 votes
0 answers
23 views

Is there an XML-like language (or any language) which allows easy expression of overlapping data?

(This is PROBABLY in the wrong site but I am unsure of where the right site is to assign this question to. Mod(s), please forgive and assist me.) I have the following sequence: cdadbcdacdbcbc I ...
nameless_nameseeker's user avatar
1 vote
1 answer
2k views

Venn Diagram from GRanges

I have granges objects like these( showing two of the four): > upmd_Hf3a GRanges object with 398117 ranges and 2 metadata columns: seqnames ranges strand | type ...
Anupam Sinha's user avatar
2 votes
2 answers
1k views

Make a Venn diagram of 5 bed files overlapped [closed]

I have to compare the overlap or shared regions for 5 bed files and make a venn diagram of the overlapped regions. I can use pybedtools but it's for 3 files max. Or I found http://bioinformatics.psb....
Nono_sad's user avatar
  • 443
0 votes
1 answer
756 views

D3.js breaking up overlapping shapes

I'm trying to create a chart, where the input is a list of circles (position and radius) (or better ellipses) and the overlaps of the circles become shapes and a mouseover event can be applied. I also ...
Ryan's user avatar
  • 3