User profiles for "author:van Oudenaarden A"

Alexander van Oudenaarden

Hubrecht Institute
Verified email at hubrecht.eu
Cited by 65358

[HTML][HTML] Nature, nurture, or chance: stochastic gene expression and its consequences

A Raj, A Van Oudenaarden�- Cell, 2008 - cell.com
Gene expression is a fundamentally stochastic process, with randomness in transcription
and translation leading to cell-to-cell variations in mRNA and protein levels. This variation�…

[HTML][HTML] Cellular decision making and biological noise: from microbes to mammals

G Bal�zsi, A Van Oudenaarden, JJ Collins�- Cell, 2011 - cell.com
Cellular decision making is the process whereby cells assume different, functionally
important and heritable fates without an associated genetic or environmental difference�…

Using gene expression noise to understand gene regulation

B Munsky, G Neuert, A Van Oudenaarden�- Science, 2012 - science.org
Phenotypic variation is ubiquitous in biology and is often traceable to underlying genetic and
environmental variation. However, even genetically identical cells in identical environments�…

Regulation of noise in the expression of a single gene

EM Ozbudak, M Thattai, I Kurtser, AD Grossman…�- Nature�…, 2002 - nature.com
Stochastic mechanisms are ubiquitous in biological systems. Biochemical reactions that
involve small numbers of molecules are intrinsically noisy, being dominated by large�…

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

AM Khalil, M Guttman, M Huarte…�- Proceedings of the�…, 2009 - National Acad Sciences
We recently showed that the mammalian genome encodes> 1,000 large intergenic
noncoding (linc) RNAs that are clearly conserved across mammals and, thus, functional�…

Single-cell messenger RNA sequencing reveals rare intestinal cell types

D Gr�n, A Lyubimova, L Kester, K Wiebrands, O Basak…�- Nature, 2015 - nature.com
Understanding the development and function of an organ requires the characterization of all
of its cell types. Traditional methods for visualizing and isolating subpopulations of cells are�…

[HTML][HTML] Prospective derivation of a living organoid biobank of colorectal cancer patients

M Van de Wetering, HE Francies, JM Francis…�- Cell, 2015 - cell.com
In Rspondin-based 3D cultures, Lgr5 stem cells from multiple organs form ever-expanding
epithelial organoids that retain their tissue identity. We report the establishment of tumor�…

MicroRNAs can generate thresholds in target gene expression

S Mukherji, MS Ebert, GXY Zheng, JS Tsang…�- Nature�…, 2011 - nature.com
MicroRNAs (miRNAs) are short, highly conserved noncoding RNA molecules that repress
gene expression in a sequence-dependent manner. We performed single-cell�…

The human cell atlas

A Regev, SA Teichmann, ES Lander, I Amit, C Benoist…�- elife, 2017 - elifesciences.org
The recent advent of methods for high-throughput single-cell molecular profiling has
catalyzed a growing sense in the scientific community that the time is ripe to complete the�…

[HTML][HTML] MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals

J Tsang, J Zhu, A van Oudenaarden�- Molecular cell, 2007 - cell.com
MicroRNAs (miRNAs) are regulatory molecules that participate in diverse biological
processes in animals and plants. While thousands of mammalian genes are potentially�…