[HTML][HTML] Cell-cycle dependence of transcription dominates noise in gene expression

CJ Zopf, K Quinn, J Zeidman…�- PLoS computational�…, 2013 - journals.plos.org
The large variability in mRNA and protein levels found from both static and dynamic
measurements in single cells has been largely attributed to random periods of transcription�…

A phase 1, dose-escalation study of PF-06664178, an anti-Trop-2/Aur0101 antibody-drug conjugate in patients with advanced or metastatic solid tumors

GT King, KD Eaton, BR Beagle, CJ Zopf…�- Investigational new�…, 2018 - Springer
Summary Purpose and Methods Trop-2 is a glycoprotein over-expressed in many solid
tumors but at low levels in normal human tissue, providing a potential therapeutic target. We�…

First‐in‐human, phase I study of PF‐06647263, an anti‐EFNA4 calicheamicin antibody–drug conjugate, in patients with advanced solid tumors

I Garrido‐Laguna, I Krop, HA Burris III…�- …�journal of cancer, 2019 - Wiley Online Library
PF‐06647263, a novel antibody–drug conjugate consisting of an anti‐EFNA4 antibody
linked to a calicheamicin payload, has shown potent antitumor activity in human xenograft�…

The interaction of promoter chromatin architecture with the cell cycle regulates transcription activation kinetics

CJ Zopf - 2013 - dspace.mit.edu
The relationship between regulatory trans-factors binding a gene's cis-regulatory sequence
elements and the transcriptional output of that gene is fundamental to even the most�…

Scale-free structure of cancer networks and their vulnerability to hub-directed combination therapy

AX Chen, CJ Zopf, J Mettetal, WC Shyu, J Bolen…�- bioRxiv, 2020 - biorxiv.org
Background The effectiveness of many targeted therapies is limited by toxicity and the rise of
drug resistance. A growing appreciation of the inherent redundancies of cancer signaling�…

Acquiring fluorescence time-lapse movies of budding yeast and analyzing single-cell dynamics using GRAFTS

CJ Zopf, N Maheshri�- JoVE (Journal of Visualized Experiments), 2013 - jove.com
Fluorescence time-lapse microscopy has become a powerful tool in the study of many
biological processes at the single-cell level. In particular, movies depicting the temporal�…

Using target engagement biomarkers to predict clinical efficacy of MetAP2 inhibitors

PJ Farrell, CJ Zopf, HJ Huang, D Balakrishna…�- …�of Pharmacology and�…, 2019 - ASPET
Target-engagement pharmacodynamic (PD) biomarkers are valuable tools in the
prioritization of drug candidates, especially for novel, first-in-class mechanisms whose�…

Abstract A59: Treatment with targeted anticancer agent affects rapidly growing subclones: An integrated in vitro/in silico analysis of clonal heterogeneity in soft agar.

CJ Zopf, C Szynal, S Palani, D Bowman…�- Molecular Cancer�…, 2013 - AACR
A growing body of clinical evidence supports a view that the often observed refractory tumor
rebound arises from variation in treatment response among tumor subclones already�…

[PDF][PDF] Cell-cycle dominates noisy gene expression

CJ Zopf, KQ Quinn, NS Wren, N Maheshri - q-bio.org
Short Abstract—The large variability in mRNA and protein levels found from single cell
measurements has been largely attributed to random periods of transcription, often�…

Variability in xenograft growth rates can be explained by intra-tumor evolutionary dynamics

CJ Zopf, A Chen, M Patel, S Palani, S Bandi, D Blair…�- Cancer Research, 2014 - AACR
Growing evidence frames cancer as a disease of somatic Darwinian evolution. Recent
reports establish both inter-and intra-tumor genetic heterogeneity within patients, and�…