Synthetic recording and in situ readout of lineage information in single cells
Reconstructing the lineage relationships and dynamic event histories of individual cells
within their native spatial context is a long-standing challenge in biology. Many biological�…
within their native spatial context is a long-standing challenge in biology. Many biological�…
[HTML][HTML] Dynamic heterogeneity and DNA methylation in embryonic stem cells
Cell populations can be strikingly heterogeneous, composed of multiple cellular states, each
exhibiting stochastic noise in its gene expression. A major challenge is to disentangle these�…
exhibiting stochastic noise in its gene expression. A major challenge is to disentangle these�…
[HTML][HTML] Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming
Cellular reprogramming highlights the epigenetic plasticity of the somatic cell state. Long
noncoding RNAs (lncRNAs) have emerging roles in epigenetic regulation, but their potential�…
noncoding RNAs (lncRNAs) have emerging roles in epigenetic regulation, but their potential�…
[HTML][HTML] Inferring cell-state transition dynamics from lineage trees and endpoint single-cell measurements
As they proliferate, living cells undergo transitions between specific molecularly and
developmentally distinct states. Despite the functional centrality of these transitions in�…
developmentally distinct states. Despite the functional centrality of these transitions in�…
Rapid screening of engineered microbial therapies in a 3D multicellular model
T Harimoto, ZS Singer, OS Velazquez…�- Proceedings of the�…, 2019 - National Acad Sciences
Synthetic biology is transforming therapeutic paradigms by engineering living cells and
microbes to intelligently sense and respond to diseases including inflammation, infections�…
microbes to intelligently sense and respond to diseases including inflammation, infections�…
[HTML][HTML] Quantitative measurements of early alphaviral replication dynamics in single cells reveals the basis for superinfection exclusion
While decades of research have elucidated many steps of the alphavirus lifecycle, the
earliest replication dynamics have remained unclear. This missing time window has�…
earliest replication dynamics have remained unclear. This missing time window has�…
Sindbis Macrodomain Poly-ADP-Ribose Hydrolase Activity Is Important for Viral RNA Synthesis
ABSTRACT ADP-ribosylation is a highly dynamic posttranslational modification frequently
studied in stress response pathways with recent attention given to its role in response to viral�…
studied in stress response pathways with recent attention given to its role in response to viral�…
Segmentation with residual attention u-net and an edge-enhancement approach preserves cell shape features
The ability to extrapolate gene expression dynamics in living single cells requires robust cell
segmentation, and one of the challenges is the amorphous or irregularly shaped cell�…
segmentation, and one of the challenges is the amorphous or irregularly shaped cell�…
Engineered bacteria launch and control an oncolytic virus
The ability of bacteria and viruses to selectively replicate in tumors has led to synthetic
engineering of new microbial therapies. Here we design a cooperative strategy whereby S�…
engineering of new microbial therapies. Here we design a cooperative strategy whereby S�…
Spatial control of bacteria using screen printing
S Moon, IL Fritz, ZS Singer, T Danino�- 3D Printing and Additive�…, 2016 - liebertpub.com
Synthetic biology has led to advances in both our understanding and engineering of genetic
circuits that affect spatial and temporal behaviors in living cells. A growing array of native�…
circuits that affect spatial and temporal behaviors in living cells. A growing array of native�…