Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast

N Pavelka, G Rancati, J Zhu, WD Bradford, A Saraf…�- Nature, 2010 - nature.com
Aneuploidy, referring here to genome contents characterized by abnormal numbers of
chromosomes, has been associated with developmental defects, cancer and adaptive�…

[HTML][HTML] Differential complex formation via paralogs in the human Sin3 protein interaction network

MK Adams, CAS Banks, JL Thornton, CG Kempf…�- Molecular & Cellular�…, 2020 - ASBMB
Despite the continued analysis of HDAC inhibitors in clinical trials, the heterogeneous
nature of the protein complexes they target limits our understanding of the beneficial and off�…

[HTML][HTML] TNIP2 is a hub protein in the NF-κB network with both protein and RNA mediated interactions

CAS Banks, G Boanca, ZT Lee, CG Eubanks…�- Molecular & Cellular�…, 2016 - ASBMB
The NF-κB family of transcription factors is pivotal in controlling cellular responses to
environmental stresses; abnormal nuclear factor kappa-light-chain-enhancer of activated B�…

[HTML][HTML] Controlling for gene expression changes in transcription factor protein networks

CAS Banks, ZT Lee, G Boanca…�- Molecular & Cellular�…, 2014 - ASBMB
The development of affinity purification technologies combined with mass spectrometric
analysis of purified protein mixtures has been used both to identify new protein–protein�…

[HTML][HTML] Proteomic and genomic analyses of the Rvb1 and Rvb2 interaction network upon deletion of R2TP complex components

M Lakshminarasimhan, G Boanca, CAS Banks…�- Molecular & Cellular�…, 2016 - ASBMB
The highly conserved yeast R2TP complex, consisting of Rvb1, Rvb2, Pih1, and Tah1,
participates in diverse cellular processes ranging from assembly of protein complexes to�…