User profiles for "author:Dunham MJ"

Maitreya J Dunham

Genome Sciences, University of Washington
Verified email at uw.edu
Cited by 11960

[HTML][HTML] Comparing whole genomes using DNA microarrays

D Gresham, MJ Dunham, D Botstein�- Nature Reviews Genetics, 2008 - nature.com
The rapid accumulation of complete genomic sequences offers the opportunity to carry out
an analysis of inter-and intra-individual genome variation within a species on a routine�…

[HTML][HTML] The enduring utility of continuous culturing in experimental evolution

D Gresham, MJ Dunham�- Genomics, 2014 - Elsevier
Studying evolution in the laboratory provides a means of understanding the processes,
dynamics and outcomes of adaptive evolution in precisely controlled and readily replicated�…

[HTML][HTML] Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions

BB Haab, MJ Dunham, PO Brown�- Genome biology, 2001 - Springer
Background We have developed and tested a method for printing protein microarrays and
using these microarrays in a comparative fluorescence assay to measure the abundance of�…

Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae

MJ Dunham, H Badrane, T Ferea…�- Proceedings of the�…, 2002 - National Acad Sciences
Genome rearrangements, especially amplifications and deletions, have regularly been
observed as responses to sustained application of the same strong selective pressure in�…

Effects of aneuploidy on cellular physiology and cell division in haploid yeast

EM Torres, T Sokolsky, CM Tucker, LY Chan, M Boselli…�- science, 2007 - science.org
Aneuploidy is a condition frequently found in tumor cells, but its effect on cellular physiology
is not known. We have characterized one aspect of aneuploidy: the gain of extra�…

[HTML][HTML] The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast

D Gresham, MM Desai, CM Tucker, HT Jenq…�- PLoS�…, 2008 - journals.plos.org
The experimental evolution of laboratory populations of microbes provides an opportunity to
observe the evolutionary dynamics of adaptation in real time. Until very recently, however�…

[HTML][HTML] Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

DM Bickhart, BD Rosen, S Koren, BL Sayre…�- Nature�…, 2017 - nature.com
The decrease in sequencing cost and increased sophistication of assembly algorithms for
short-read platforms has resulted in a sharp increase in the number of species with genome�…

[HTML][HTML] Identification of aneuploidy-tolerating mutations

EM Torres, N Dephoure, A Panneerselvam, CM Tucker…�- Cell, 2010 - cell.com
Aneuploidy causes a proliferative disadvantage in all normal cells analyzed to date, yet this
condition is associated with a disease characterized by unabated proliferative potential�…

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

DR Scannell, OA Zill, A Rokas, C Payen…�- G3: Genes�…, 2011 - academic.oup.com
High-quality, well-annotated genome sequences and standardized laboratory strains fuel
experimental and evolutionary research. We present improved genome sequences of three�…

[HTML][HTML] Variant interpretation: functional assays to the rescue

LM Starita, N Ahituv, MJ Dunham, JO Kitzman…�- The American Journal of�…, 2017 - cell.com
Classical genetic approaches for interpreting variants, such as case-control or co-
segregation studies, require finding many individuals with each variant. Because the�…