[HTML][HTML] Passive noise filtering by cellular compartmentalization

T Stoeger, N Battich, L Pelkmans�- Cell, 2016 - cell.com
Chemical reactions contain an inherent element of randomness, which presents itself as
noise that interferes with cellular processes and communication. Here we discuss the ability�…

[HTML][HTML] Control of transcript variability in single mammalian cells

N Battich, T Stoeger, L Pelkmans�- Cell, 2015 - cell.com
A central question in biology is whether variability between genetically identical cells
exposed to the same culture conditions is largely stochastic or deterministic. Using image�…

Image-based transcriptomics in thousands of single human cells at single-molecule resolution

N Battich, T Stoeger, L Pelkmans�- Nature methods, 2013 - nature.com
Fluorescence in situ hybridization (FISH) is widely used to obtain information about
transcript copy number and subcellular localization in single cells. However, current�…

Sequencing metabolically labeled transcripts in single cells reveals mRNA turnover strategies

N Battich, J Beumer, B De Barbanson, L Krenning…�- Science, 2020 - science.org
The regulation of messenger RNA levels in mammalian cells can be achieved by the
modulation of synthesis and degradation rates. Metabolic RNA-labeling experiments in bulk�…

[HTML][HTML] High-throughput total RNA sequencing in single cells using VASA-seq

F Salmen, J De Jonghe, TS Kaminski, A Alemany…�- Nature�…, 2022 - nature.com
Most methods for single-cell transcriptome sequencing amplify the termini of polyadenylated
transcripts, capturing only a small fraction of the total cellular transcriptome. This precludes�…

[HTML][HTML] A systems-level study reveals regulators of membrane-less organelles in human cells

D Berchtold, N Battich, L Pelkmans�- Molecular cell, 2018 - cell.com
Membrane-less organelles (MLOs) are liquid-like subcellular compartments that form
through phase separation of proteins and RNA. While their biophysical properties are�…

Cell-intrinsic adaptation of lipid composition to local crowding drives social behaviour

M Frechin, T Stoeger, S Daetwyler, C Gehin, N Battich…�- Nature, 2015 - nature.com
Cells sense the context in which they grow to adapt their phenotype and allow multicellular
patterning by mechanisms of autocrine and paracrine signalling,. However, patterns also�…

[HTML][HTML] Environmental dependence of genetic constraint

MGJ de Vos, FJ Poelwijk, N Battich, JDT Ndika…�- PLoS�…, 2013 - journals.plos.org
The epistatic interactions that underlie evolutionary constraint have mainly been studied for
constant external conditions. However, environmental changes may modulate epistasis and�…

Computer vision for image-based transcriptomics

T Stoeger, N Battich, MD Herrmann, Y Yakimovich…�- Methods, 2015 - Elsevier
Single-cell transcriptomics has recently emerged as one of the most promising tools for
understanding the diversity of the transcriptome among single cells. Image-based�…

[HTML][HTML] Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo

W van Leeuwen, M VanInsberghe, N Battich…�- Cell reports�…, 2022 - cell.com
Stress granules are phase-separated assemblies formed around RNAs. So far, the
techniques available to identify these RNAs are not suitable for single cells and small�…