[HTML][HTML] Passive noise filtering by cellular compartmentalization
T Stoeger, N Battich, L Pelkmans�- Cell, 2016 - cell.com
Chemical reactions contain an inherent element of randomness, which presents itself as
noise that interferes with cellular processes and communication. Here we discuss the ability�…
noise that interferes with cellular processes and communication. Here we discuss the ability�…
[HTML][HTML] Control of transcript variability in single mammalian cells
N Battich, T Stoeger, L Pelkmans�- Cell, 2015 - cell.com
A central question in biology is whether variability between genetically identical cells
exposed to the same culture conditions is largely stochastic or deterministic. Using image�…
exposed to the same culture conditions is largely stochastic or deterministic. Using image�…
Image-based transcriptomics in thousands of single human cells at single-molecule resolution
N Battich, T Stoeger, L Pelkmans�- Nature methods, 2013 - nature.com
Fluorescence in situ hybridization (FISH) is widely used to obtain information about
transcript copy number and subcellular localization in single cells. However, current�…
transcript copy number and subcellular localization in single cells. However, current�…
Sequencing metabolically labeled transcripts in single cells reveals mRNA turnover strategies
N Battich, J Beumer, B De Barbanson, L Krenning…�- Science, 2020 - science.org
The regulation of messenger RNA levels in mammalian cells can be achieved by the
modulation of synthesis and degradation rates. Metabolic RNA-labeling experiments in bulk�…
modulation of synthesis and degradation rates. Metabolic RNA-labeling experiments in bulk�…
[HTML][HTML] High-throughput total RNA sequencing in single cells using VASA-seq
Most methods for single-cell transcriptome sequencing amplify the termini of polyadenylated
transcripts, capturing only a small fraction of the total cellular transcriptome. This precludes�…
transcripts, capturing only a small fraction of the total cellular transcriptome. This precludes�…
[HTML][HTML] A systems-level study reveals regulators of membrane-less organelles in human cells
D Berchtold, N Battich, L Pelkmans�- Molecular cell, 2018 - cell.com
Membrane-less organelles (MLOs) are liquid-like subcellular compartments that form
through phase separation of proteins and RNA. While their biophysical properties are�…
through phase separation of proteins and RNA. While their biophysical properties are�…
Cell-intrinsic adaptation of lipid composition to local crowding drives social behaviour
Cells sense the context in which they grow to adapt their phenotype and allow multicellular
patterning by mechanisms of autocrine and paracrine signalling,. However, patterns also�…
patterning by mechanisms of autocrine and paracrine signalling,. However, patterns also�…
[HTML][HTML] Environmental dependence of genetic constraint
The epistatic interactions that underlie evolutionary constraint have mainly been studied for
constant external conditions. However, environmental changes may modulate epistasis and�…
constant external conditions. However, environmental changes may modulate epistasis and�…
Computer vision for image-based transcriptomics
T Stoeger, N Battich, MD Herrmann, Y Yakimovich…�- Methods, 2015 - Elsevier
Single-cell transcriptomics has recently emerged as one of the most promising tools for
understanding the diversity of the transcriptome among single cells. Image-based�…
understanding the diversity of the transcriptome among single cells. Image-based�…
[HTML][HTML] Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo
W van Leeuwen, M VanInsberghe, N Battich…�- Cell reports�…, 2022 - cell.com
Stress granules are phase-separated assemblies formed around RNAs. So far, the
techniques available to identify these RNAs are not suitable for single cells and small�…
techniques available to identify these RNAs are not suitable for single cells and small�…