Comparative genomics reveals insights into avian genome evolution and adaptation

G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz…�- Science, 2014 - science.org
Birds are the most species-rich class of tetrapod vertebrates and have wide relevance
across many research fields. We explored bird macroevolution using full genomes from 48�…

What have we learned from the first 500 avian genomes?

GA Bravo, CJ Schmitt…�- Annual Review of Ecology�…, 2021 - annualreviews.org
The increased capacity of DNA sequencing has significantly advanced our understanding of
the phylogeny of birds and the proximate and ultimate mechanisms molding their genomic�…

Comparative genomic data of the Avian Phylogenomics Project

G Zhang, B Li, C Li, MTP Gilbert, ED Jarvis…�- …, 2014 - academic.oup.com
Background The evolutionary relationships of modern birds are among the most challenging
to understand in systematic biology and have been debated for centuries. To address this�…

A phylogenomic study of birds reveals their evolutionary history

SJ Hackett, RT Kimball, S Reddy, RCK Bowie…�- science, 2008 - science.org
Deep avian evolutionary relationships have been difficult to resolve as a result of a putative
explosive radiation. Our study examined∼ 32 kilobases of aligned nuclear DNA sequences�…

[HTML][HTML] Complexity of avian evolution revealed by family-level genomes

J Stiller, S Feng, AA Chowdhury, I Rivas-Gonz�lez…�- Nature, 2024 - nature.com
Despite tremendous efforts in the past decades, relationships among main avian lineages
remain heavily debated without a clear resolution. Discrepancies have been attributed to�…

Avian genomes revisited: hidden genes uncovered and the rates versus traits paradox in birds

F Botero-Castro, E Figuet, MK Tilak…�- Molecular biology�…, 2017 - academic.oup.com
According to current assemblies, avian genomes differ from those of the other lineages of
amniotes in 1) containing a lower number of genes; 2) displaying a high stability of�…

Whole-genome analyses resolve early branches in the tree of life of modern birds

ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li…�- Science, 2014 - science.org
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods�…

[HTML][HTML] Conserved syntenic clusters of protein coding genes are missing in birds

PV Lovell, M Wirthlin, L Wilhelm, P Minx, NH Lazar…�- Genome biology, 2014 - Springer
Background Birds are one of the most highly successful and diverse groups of vertebrates,
having evolved a number of distinct characteristics, including feathers and wings, a sturdy�…

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

A K�nstner, JBW Wolf, N Backstr�m…�- Molecular�…, 2010 - Wiley Online Library
Next‐generation sequencing technology provides an attractive means to obtain large‐scale
sequence data necessary for comparative genomic analysis. To analyse the patterns of�…

Phylogenetics of modern birds in the era of genomics

SV Edwards, W Bryan Jennings…�- Proceedings of the�…, 2005 - royalsocietypublishing.org
In the 14 years since the first higher-level bird phylogenies based on DNA sequence data,
avian phylogenetics has witnessed the advent and maturation of the genomics era, the�…