Gut microbes and the brain: paradigm shift in neuroscience
The discovery of the size and complexity of the human microbiome has resulted in an
ongoing reevaluation of many concepts of health and disease, including diseases affecting�…
ongoing reevaluation of many concepts of health and disease, including diseases affecting�…
[HTML][HTML] Analysis of microbial compositions: a review of normalization and differential abundance analysis
H Lin, SD Peddada�- NPJ biofilms and microbiomes, 2020 - nature.com
Increasingly, researchers are discovering associations between microbiome and a wide
range of human diseases such as obesity, inflammatory bowel diseases, HIV, and so on�…
range of human diseases such as obesity, inflammatory bowel diseases, HIV, and so on�…
The pancreatic cancer microbiome promotes oncogenesis by induction of innate and adaptive immune suppression
We found that the cancerous pancreas harbors a markedly more abundant microbiome
compared with normal pancreas in both mice and humans, and select bacteria are�…
compared with normal pancreas in both mice and humans, and select bacteria are�…
The fungal mycobiome promotes pancreatic oncogenesis via activation of MBL
Bacterial dysbiosis accompanies carcinogenesis in malignancies such as colon and liver
cancer, and has recently been implicated in the pathogenesis of pancreatic ductal�…
cancer, and has recently been implicated in the pathogenesis of pancreatic ductal�…
[HTML][HTML] Waste not, want not: why rarefying microbiome data is inadmissible
PJ McMurdie, S Holmes�- PLoS computational biology, 2014 - journals.plos.org
Current practice in the normalization of microbiome count data is inefficient in the statistical
sense. For apparently historical reasons, the common approach is either to use simple�…
sense. For apparently historical reasons, the common approach is either to use simple�…
Gut microbiota from multiple sclerosis patients enables spontaneous autoimmune encephalomyelitis in mice
K Berer, LA Gerdes, E Cekanaviciute…�- Proceedings of the�…, 2017 - National Acad Sciences
There is emerging evidence that the commensal microbiota has a role in the pathogenesis
of multiple sclerosis (MS), a putative autoimmune disease of the CNS. Here, we compared�…
of multiple sclerosis (MS), a putative autoimmune disease of the CNS. Here, we compared�…
A microbial signature for Crohn's disease
Objective A decade of microbiome studies has linked IBD to an alteration in the gut microbial
community of genetically predisposed subjects. However, existing profiles of gut microbiome�…
community of genetically predisposed subjects. However, existing profiles of gut microbiome�…
Qiita: rapid, web-enabled microbiome meta-analysis
Multi-omic insights into microbiome function and composition typically advance one study at
a time. However, in order for relationships across studies to be fully understood, data must�…
a time. However, in order for relationships across studies to be fully understood, data must�…
[HTML][HTML] Characterization of the gut microbiome using 16S or shotgun metagenomics
The advent of next generation sequencing (NGS) has enabled investigations of the gut
microbiome with unprecedented resolution and throughput. This has stimulated the�…
microbiome with unprecedented resolution and throughput. This has stimulated the�…
[HTML][HTML] Enhancing diversity analysis by repeatedly rarefying next generation sequencing data describing microbial communities
Amplicon sequencing has revolutionized our ability to study DNA collected from
environmental samples by providing a rapid and sensitive technique for microbial�…
environmental samples by providing a rapid and sensitive technique for microbial�…