Using pure sugars for fermentative biohydrogen (bioH 2) production is known as an
economically impeditive approach due to the high costs of raw materials, which leads to the�…

Biotic and abiotic interactions shape natural microbial communities. The mechanisms
behind microbe–microbe interactions, particularly those protein based, are not well�…

Background Contamination detection is a important step that should be carefully considered
in early stages when designing and performing microbiome studies to avoid biased�…

The human microbiome plays an important role in maintaining health. Changes in the
taxonomic and functional composition of the gut microbiota have been implicated in�…

Recent advances in microbiome research have led to the further development of microbial
interventions, such as probiotics and prebiotics, which are potential treatments for�…

Computational phylogenetics has been dominated by model-based parametric inference,
which is sensitive to model misspecification and has high computational burden. In this�…

The human gut microbiome is a complex and dynamic ecosystem, featuring a multitude of
microbes all interacting with their hosts in an elaborate manner. Even though this exchange�…

Microbes vastly outnumber all other organisms on earth and are integral to many aspects of
the ecological fitness of the earth's soils, oceans, animals, and plants. Unfortunately, most of�…

Next-generation DNA sequencing technologies have made marker-gene DNA sequence
data widely available. Analysis of microbiome data has many challenges, including sparsity�…

Large-scale microbiome datasets from 16S amplicon sequencing provide opportunities for
building predictive models with supervised machine learning to answer questions of�…