[PDF][PDF] Pymol: An open-source molecular graphics tool
WL DeLano�- CCP4 Newsl. Protein Crystallogr, 2002 - Citeseer
PyMOL is a free cross-platform molecular graphics system made possible through recent
advances in hardware 1, internet 2, and software development technology 3. PyMOL�…
advances in hardware 1, internet 2, and software development technology 3. PyMOL�…
[HTML][HTML] Boosting the full potential of PyMOL with structural biology plugins
S Rosignoli, A Paiardini�- Biomolecules, 2022 - mdpi.com
Over the past few decades, the number of available structural bioinformatics pipelines,
libraries, plugins, web resources and software has increased exponentially and become�…
libraries, plugins, web resources and software has increased exponentially and become�…
Using PyMOL as a platform for computational drug design
PyMOL, a cross‐platform molecular graphics tool, has been widely used for three‐
dimensional (3D) visualization of proteins, nucleic acids, small molecules, electron�…
dimensional (3D) visualization of proteins, nucleic acids, small molecules, electron�…
NGLview–interactive molecular graphics for Jupyter notebooks
Abstract Summary NGLview is a Jupyter/IPython widget to interactively view molecular
structures as well as trajectories from molecular dynamics simulations. Fast and scalable�…
structures as well as trajectories from molecular dynamics simulations. Fast and scalable�…
[HTML][HTML] Molecular graphics: bridging structural biologists and computer scientists
Visualization of molecular structures is one of the most common tasks carried out by
structural biologists, typically using software, such as Chimera, COOT, PyMOL, or VMD. In�…
structural biologists, typically using software, such as Chimera, COOT, PyMOL, or VMD. In�…
The Protein Imager: a full-featured online molecular viewer interface with server-side HQ-rendering capabilities
G Tomasello, I Armenia, G Molla�- Bioinformatics, 2020 - academic.oup.com
Molecular viewers' long learning curve is hindering researchers in approaching the field of
structural biology for the first time. Herein, we present 'The Protein Imager', a lightweight�…
structural biology for the first time. Herein, we present 'The Protein Imager', a lightweight�…
YASARA View—molecular graphics for all devices—from smartphones to workstations
E Krieger, G Vriend�- Bioinformatics, 2014 - academic.oup.com
Today's graphics processing units (GPUs) compose the scene from individual triangles. As
about 320 triangles are needed to approximate a single sphere—an atom—in a convincing�…
about 320 triangles are needed to approximate a single sphere—an atom—in a convincing�…
[HTML][HTML] ePMV embeds molecular modeling into professional animation software environments
Increasingly complex research has made it more difficult to prepare data for publication,
education, and outreach. Many scientists must also wade through black-box code to�…
education, and outreach. Many scientists must also wade through black-box code to�…
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
D Sehnal, S Bittrich, M Deshpande…�- Nucleic acids�…, 2021 - academic.oup.com
Large biomolecular structures are being determined experimentally on a daily basis using
established techniques such as crystallography and electron microscopy. In addition�…
established techniques such as crystallography and electron microscopy. In addition�…
3Dmol. js: molecular visualization with WebGL
N Rego, D Koes�- Bioinformatics, 2015 - academic.oup.com
3Dmol. js is a modern, object-oriented JavaScript library that uses the latest web
technologies to provide interactive, hardware-accelerated three-dimensional�…
technologies to provide interactive, hardware-accelerated three-dimensional�…