[PDF][PDF] Pymol: An open-source molecular graphics tool

WL DeLano�- CCP4 Newsl. Protein Crystallogr, 2002 - Citeseer
PyMOL is a free cross-platform molecular graphics system made possible through recent
advances in hardware 1, internet 2, and software development technology 3. PyMOL�…

[HTML][HTML] Boosting the full potential of PyMOL with structural biology plugins

S Rosignoli, A Paiardini�- Biomolecules, 2022 - mdpi.com
Over the past few decades, the number of available structural bioinformatics pipelines,
libraries, plugins, web resources and software has increased exponentially and become�…

Using PyMOL as a platform for computational drug design

S Yuan, HCS Chan, Z Hu�- Wiley Interdisciplinary Reviews�…, 2017 - Wiley Online Library
PyMOL, a cross‐platform molecular graphics tool, has been widely used for three‐
dimensional (3D) visualization of proteins, nucleic acids, small molecules, electron�…

NGLview–interactive molecular graphics for Jupyter notebooks

H Nguyen, DA Case, AS Rose�- Bioinformatics, 2018 - academic.oup.com
Abstract Summary NGLview is a Jupyter/IPython widget to interactively view molecular
structures as well as trajectories from molecular dynamics simulations. Fast and scalable�…

[HTML][HTML] Molecular graphics: bridging structural biologists and computer scientists

X Martinez, M Krone, N Alharbi, AS Rose, RS Laramee…�- Structure, 2019 - cell.com
Visualization of molecular structures is one of the most common tasks carried out by
structural biologists, typically using software, such as Chimera, COOT, PyMOL, or VMD. In�…

The Protein Imager: a full-featured online molecular viewer interface with server-side HQ-rendering capabilities

G Tomasello, I Armenia, G Molla�- Bioinformatics, 2020 - academic.oup.com
Molecular viewers' long learning curve is hindering researchers in approaching the field of
structural biology for the first time. Herein, we present 'The Protein Imager', a lightweight�…

YASARA View—molecular graphics for all devices—from smartphones to workstations

E Krieger, G Vriend�- Bioinformatics, 2014 - academic.oup.com
Today's graphics processing units (GPUs) compose the scene from individual triangles. As
about 320 triangles are needed to approximate a single sphere—an atom—in a convincing�…

[HTML][HTML] ePMV embeds molecular modeling into professional animation software environments

GT Johnson, L Autin, DS Goodsell, MF Sanner…�- Structure, 2011 - cell.com
Increasingly complex research has made it more difficult to prepare data for publication,
education, and outreach. Many scientists must also wade through black-box code to�…

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

D Sehnal, S Bittrich, M Deshpande…�- Nucleic acids�…, 2021 - academic.oup.com
Large biomolecular structures are being determined experimentally on a daily basis using
established techniques such as crystallography and electron microscopy. In addition�…

3Dmol. js: molecular visualization with WebGL

N Rego, D Koes�- Bioinformatics, 2015 - academic.oup.com
3Dmol. js is a modern, object-oriented JavaScript library that uses the latest web
technologies to provide interactive, hardware-accelerated three-dimensional�…