[PDF][PDF] Pymol: An open-source molecular graphics tool

WL DeLano�- CCP4 Newsl. Protein Crystallogr, 2002 - Citeseer
PyMOL is a free cross-platform molecular graphics system made possible through recent …
PyMOL provides most of the capabilities and performance of traditional molecular graphics

Using PyMOL as a platform for computational drug design

S Yuan, HCS Chan, Z Hu�- …�Reviews: Computational Molecular�…, 2017 - Wiley Online Library
PyMOL is an open-source molecularPyMOL is a cross-platform molecular graphic tool
and has been widely used for 3D visualization of macromolecules. The utilities of PyMOL have …

Molecular dynamics simulation by GROMACS using GUI plugin for PyMOL

T Makarewicz, R Kazmierkiewicz - 2013 - ACS Publications
… These are the reasons why we developed an open source plugin for PyMOL, which … for
the popular molecular graphics software PyMOL that allows one to perform molecular dynamics …

[PDF][PDF] Mol*: Towards a Common Library and Tools for Web Molecular Graphics.

D Sehnal, AS Rose, J Koca, SK Burley, S Velankar�- MolVa@ EuroVis, 2018 - diglib.eg.org
… Here we introduce Mol* (/’mol-star/), an open source project … library and tools for web-based
molecular graphics and … PyMOL, Jmol, VMD, etc. scripts to describe application state. …

[HTML][HTML] An introduction to biomolecular graphics

C Mura, CM McCrimmon, J Vertrees…�- PLoS computational�…, 2010 - journals.plos.org
tools are often necessary in the workflow leading to a finalized piece of molecular graphics.
… DeLano, visionary creator and developer of the open-source PyMOL system. Note that this …

Azahar: a PyMOL plugin for construction, visualization and analysis of glycan molecules

A Arroyuelo, JA Vila, OA Martin�- Journal of computer-aided molecular�…, 2016 - Springer
… The Graphic User Interface (GUI) was written with Tkinter [14]. Azahar is … for the PyMOL
visualization software [1]. We chose PyMOL mainly because (a) it is a widely used open-source

[PDF][PDF] Presenting your structures: the CCP4mg molecular-graphics software

S McNicholas, E Potterton, KS Wilson…�- …�Section D: Biological�…, 2011 - journals.iucr.org
CCP4mg is a molecular-graphics program that is designed to give rapid access to both
straightforward and complex static and dynamic representations of macromolecular structures. It …

[HTML][HTML] A virtual alternative to molecular model sets: a beginners' guide to constructing and visualizing molecules in open-source molecular graphics software

S Phankingthongkum, T Limpanuparb�- BMC Research Notes, 2021 - Springer
… the two freely available molecular graphics programs, Avogadro and IQmol, … molecular
model sets. These simple exercises can be used in other class settings, other available programs

A Semester-Long Learning Path Teaching Computational Skills via Molecular Graphics in PyMOL

M Kjaergaard, LS Rasmussen, JN Vinther…�- The�…, 2022 - meridian.allenpress.com
… out basic visualization tasks using PyMOL scripts, while three-… molecular graphics software
with teaching of structural biochemistry allows a hands-on approach to analyzing molecular

Shortcuts for faster image creation in PyMOL

BHM Mooers�- Protein Science, 2020 - Wiley Online Library
… of the molecular graphics program PyMOL, which has more than 100,000 users.5 PyMOL is
open-source versions of PyMOL. The module is not easy to add to the incentive versions of …