… methods, such as Blender and PyMOL. Blender and PyMOL are desktop applications that
provide both a command line interface and a Python application programming interface (API). …

… wild-type of the predicted protein), and protein hotspot analysis capabilities, PySSA employs
the established open-source molecular structure visualisation and analysis system PyMOL […

… Molecular visualization is an essential tool for computational chemists and biologists, enabling
them to explore and understand complex protein structures and unravel vital insights for …

… as a PyMol plugin that requires no programming skills. This GUI enables users to select a
molecule … to load the molecule in PyMol, open the C3 plugin, select the molecule from the drop-…

… is an open-source platform to facilitate generative molecular … , select and visualise 2D
molecular graphs, assess clusters … PyMol [66] is installed, PyMol will be loaded and selected …

… Pymol 41 —It is a molecular visualization tool, used to generate protein–ligand complex as
well as to analyze molecular … It is an open source cheminformatics and machine learning tool, …

… need to replace the deprecated LiteMol tool previously used in ChannelsDB. This thesis
develops a specialized extension for the Mol* visualization tool to implement the visualization of …

We present the Python-based Molecule Builder for ESPResSo (pyMBE), an open source
software designed to build coarse-grained models of polyelectrolytes, peptides and globular …

Results We have developed an end-to-end interactive MD simulation application, MolDy for
Gromacs. This front-end application provides a customizable user interface integrated with …

… molecular visualization system, PyMOL, uses open source technology and his proprietary
expertise. PyMOL … past three decades of progress in molecular graphics, especially in the area …