[HTML][HTML] A virtual alternative to molecular model sets: a beginners' guide to constructing and visualizing molecules in open-source molecular graphics software
S Phankingthongkum, T Limpanuparb�- BMC Research Notes, 2021 - Springer
… the two freely available molecular graphics programs, Avogadro and IQmol, … molecular
model sets. These simple exercises can be used in other class settings, other available programs …
model sets. These simple exercises can be used in other class settings, other available programs …
A Semester-Long Learning Path Teaching Computational Skills via Molecular Graphics in PyMOL
M Kjaergaard, LS Rasmussen, JN Vinther…�- The�…, 2022 - meridian.allenpress.com
… out basic visualization tasks using PyMOL scripts, while three-… molecular graphics software
with teaching of structural biochemistry allows a hands-on approach to analyzing molecular …
with teaching of structural biochemistry allows a hands-on approach to analyzing molecular …
Shortcuts for faster image creation in PyMOL
BHM Mooers�- Protein Science, 2020 - Wiley Online Library
… of the molecular graphics program PyMOL, which has more than 100,000 users.5 PyMOL is
… open-source versions of PyMOL. The module is not easy to add to the incentive versions of …
… open-source versions of PyMOL. The module is not easy to add to the incentive versions of …
[HTML][HTML] Boosting the full potential of PyMOL with structural biology plugins
S Rosignoli, A Paiardini�- Biomolecules, 2022 - mdpi.com
… use molecular graphics tool. This review outlines the plugins and features that make PyMOL
… and Linux on both the open source and incentive PyMOL builds provided by Schr�dinger Inc…
… and Linux on both the open source and incentive PyMOL builds provided by Schr�dinger Inc…
Geo-Measures: A PyMOL plugin for protein structure ensembles analysis
… Geo-Measures GUI is based on PyMOL (The PyMOL Molecular Graphics System, … ://pymol.org
), a widely used open source tool for biomolecular visualization. The choice of PyMOL was …
), a widely used open source tool for biomolecular visualization. The choice of PyMOL was …
[HTML][HTML] pyProGA—a PyMOL plugin for protein residue network analysis
… PyMOL package is widely used in molecular research [52] and thus enjoys a large degree
of familiarity in the chemical community. Additionally, PyMOL … open source nature of PyMOL …
of familiarity in the chemical community. Additionally, PyMOL … open source nature of PyMOL …
[PDF][PDF] MAGI-Dock: a PyMOL companion to Autodock Vina
… MAGI-Dock is a free open-source software available under … such box drawing is limited to a
few molecular graphics software5 … widely used macromolecular visualization tools, PyMOL7. …
few molecular graphics software5 … widely used macromolecular visualization tools, PyMOL7. …
Templates for writing PyMOL scripts
BHM Mooers, ME Brown�- Protein Science, 2021 - Wiley Online Library
… from lecture notes on molecular graphics, scripts used to … , the PyMOL Wiki (http://pymolwiki.org),
and the PyMOL mailing … use at the PyMOL prompt in interactive PyMOL sessions. Code …
and the PyMOL mailing … use at the PyMOL prompt in interactive PyMOL sessions. Code …
PyVibMS: a PyMOL plugin for visualizing vibrations in molecules and solids
… PyVibMS was written in Python and its open-source nature makes it flexible and sustainable.
As … In this work, a PyMOL plugin named PyVibMS is developed to visualize molecular and …
As … In this work, a PyMOL plugin named PyVibMS is developed to visualize molecular and …
Visualizing protein structures—tools and trends
… tools, we will briefly discuss Chimera (latest version called ChimeraX), Jmol (and more
recently JSmol), PyMol … about the progress of molecular graphics will conclude our collection of …
recently JSmol), PyMol … about the progress of molecular graphics will conclude our collection of …