[HTML][HTML] Simple PCR assays improve the sensitivity of HIV-1 subtype B drug resistance testing and allow linking of resistance mutations

JA Johnson, JF Li, X Wei, J Lipscomb, D Bennett…�- PloS one, 2007 - journals.plos.org
Background The success of antiretroviral therapy is known to be compromised by drug-
resistant HIV-1 at frequencies detectable by conventional bulk sequencing. Currently, there�…

New technology to detect low-level drug-resistant HIV variants

A Gega, MJ Kozal�- Future virology, 2011 - Taylor & Francis
Genotypic assays to detect HIV drug resistance are recommended for use in the routine
clinical care of HIV-infected persons. Genotypic resistance assays have demonstrated good�…

Low-frequency HIV-1 drug resistance mutations can be clinically significant but must be interpreted with caution

JA Johnson, AM Geretti�- Journal of antimicrobial chemotherapy, 2010 - academic.oup.com
With drug-resistant HIV-1 present in at least 10%–20% of new infections in Western
countries and in> 60% of patients failing antiretroviral therapy (ART), monitoring HIV-1 drug�…

Primer ID informs next-generation sequencing platforms and reveals preexisting drug resistance mutations in the HIV-1 reverse transcriptase coding domain

JR Keys, S Zhou, JA Anderson, JJ Eron Jr…�- AIDS research and�…, 2015 - liebertpub.com
Sequencing of a bulk polymerase chain reaction (PCR) product to identify drug resistance
mutations informs antiretroviral therapy selection but has limited sensitivity for minority�…

HIV-1 genotypic drug resistance testing: digging deep, reaching wide?

K Van Laethem, K Theys, AM Vandamme�- Current opinion in virology, 2015 - Elsevier
Highlights•Technological innovations enable the global roll-out of drug resistance
surveillance.•Next-generation sequencing provides an answer for simultaneous resistance�…

Low-abundance drug-resistant HIV-1 variants: finding significance in an era of abundant diagnostic and therapeutic options

RW Shafer�- The Journal of infectious diseases, 2009 - academic.oup.com
Several prospective and retrospective studies have shown that genotypic testing for drug-
resistant HIV-1 variants has helped health-care providers better understand patient�…

Improvement in allele-specific PCR assay with the use of polymorphism-specific primers for the analysis of minor variant drug resistance in HIV-1 subtype C

CF Rowley, CL Boutwell, S Lockman…�- Journal of virological�…, 2008 - Elsevier
In recent years, highly sensitive assays have been developed that detect HIV-1 drug
resistance mutations when present at less than 1% of the viral population. These assays are�…

[PDF][PDF] Update of the drug resistance mutations in HIV-1: Fall 2006

VA Johnson, F Brun-V�zinet, B Clotet, DR Kuritzkes…�- Top HIV Med, 2006 - iasusa.org
The International AIDS Society–USA (IAS–USA) Drug Resistance Mutations Group is
marking 6 years as an independent volunteer panel of experts focused on identifying key�…

[HTML][HTML] Low-abundance HIV drug-resistant viral variants in treatment-experienced persons correlate with historical antiretroviral use

T Le, J Chiarella, BB Simen, B Hanczaruk, M Egholm…�- PloS one, 2009 - journals.plos.org
Background It is largely unknown how frequently low-abundance HIV drug-resistant variants
at levels under limit of detection of conventional genotyping (< 20% of quasi-species) are�…

Prevalence of HIV-1 drug resistance mutations in proviral DNA in the Swiss HIV Cohort Study, a retrospective study from 1995 to 2018

B Jaha, CD Schenkel, L J�rimann…�- Journal of�…, 2023 - academic.oup.com
Background Genotypic resistance testing (GRT) is routinely performed upon diagnosis of
HIV-1 infection or during virological failure using plasma viral RNA. An alternative source for�…