Advancing our understanding of the human microbiome using QIIME
JA Navas-Molina, JM Peralta-S�nchez…�- Methods in�…, 2013 - Elsevier
High-throughput DNA sequencing technologies, coupled with advanced bioinformatics
tools, have enabled rapid advances in microbial ecology and our understanding of the�…
tools, have enabled rapid advances in microbial ecology and our understanding of the�…
Getting started with microbiome analysis: sample acquisition to bioinformatics
R Kumar, P Eipers, RB Little, M Crowley…�- Current protocols in�…, 2014 - Wiley Online Library
Historically, in order to study microbes, it was necessary to grow them in the laboratory. It
was clear though that many microbe communities were refractory to study because none of�…
was clear though that many microbe communities were refractory to study because none of�…
QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data
QIIME 2 is a completely re‐engineered microbiome bioinformatics platform based on the
popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully�…
popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully�…
[HTML][HTML] Direct sequencing of the human microbiome readily reveals community differences
Direct sequencing of the human microbiome readily reveals community differences | Genome
Biology Skip to main content SpringerLink Account Menu Find a journal Publish with us Track�…
Biology Skip to main content SpringerLink Account Menu Find a journal Publish with us Track�…
Microbiome helper: a custom and streamlined workflow for microbiome research
Sequence-based approaches to study microbiomes, such as 16S rRNA gene sequencing
and metagenomics, are uncovering associations between microbial taxa and a myriad of�…
and metagenomics, are uncovering associations between microbial taxa and a myriad of�…
Microbial community profiling for human microbiome projects: tools, techniques, and challenges
M Hamady, R Knight�- Genome research, 2009 - genome.cshlp.org
High-throughput sequencing studies and new software tools are revolutionizing microbial
community analyses, yet the variety of experimental and computational methods can be�…
community analyses, yet the variety of experimental and computational methods can be�…
[HTML][HTML] phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
PJ McMurdie, S Holmes�- PloS one, 2013 - journals.plos.org
Background The analysis of microbial communities through DNA sequencing brings many
challenges: the integration of different types of data with methods from ecology, genetics�…
challenges: the integration of different types of data with methods from ecology, genetics�…
Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data
Studies of the human microbiome, and microbial community ecology in general, have
blossomed of late and are now a burgeoning source of exciting research findings. Along�…
blossomed of late and are now a burgeoning source of exciting research findings. Along�…
Using QIIME to analyze 16S rRNA gene sequences from microbial communities
J Kuczynski, J Stombaugh, WA Walters…�- Current protocols in�…, 2012 - Wiley Online Library
Abstract QIIME (canonically pronounced “chime”) is a software application that performs
microbial community analysis. It is an acronym for Quantitative Insights Into Microbial�…
microbial community analysis. It is an acronym for Quantitative Insights Into Microbial�…
Sequencing the human microbiome in health and disease
MJ Cox, WOCM Cookson…�- Human molecular�…, 2013 - academic.oup.com
Molecular techniques have revolutionized the practice of standard microbiology. In
particular, 16S rRNA sequencing, whole microbial genome sequencing and metagenomics�…
particular, 16S rRNA sequencing, whole microbial genome sequencing and metagenomics�…