OpenSPIM: an open-access light-sheet microscopy platform
The analysis highlighted an important role of chemokine signaling in colorectal cancer
progression and revealed previously undiscovered dynamic gene-expression patterns that�…
progression and revealed previously undiscovered dynamic gene-expression patterns that�…
PhenoRipper: software for rapidly profiling microscopy images
Next we reanalyzed a data set (~ 105 three-channel images) whose scale and complexity is
representative of highthroughput screens, which typically require dedicated image analysis�…
representative of highthroughput screens, which typically require dedicated image analysis�…
Inducible mouse models of colon cancer for the analysis of sporadic and inflammation-driven tumor progression and lymph node metastasis
C Neufert, C Heichler, T Brabletz, K Scheibe…�- Nature�…, 2021 - nature.com
Despite advances in the detection and therapy of colorectal cancer (CRC) in recent years,
CRC has remained a major challenge in clinical practice. Although alternative methods for�…
CRC has remained a major challenge in clinical practice. Although alternative methods for�…
ClearVolume: open-source live 3D visualization for light-sheet microscopy
To the Editor: Current state-of-the-art light-sheet microscopes rely on sophisticated control
software to perform the acquisition of gigabytes of image data per second over the course of�…
software to perform the acquisition of gigabytes of image data per second over the course of�…
In vivo measurement of gene expression, angiogenesis and physiological function in tumors using multiphoton laser scanning microscopy
EB Brown, RB Campbell, Y Tsuzuki, L Xu…�- Nature medicine, 2001 - nature.com
Intravital microscopy coupled with chronic animal window models has provided stunning
insight into tumor pathophysiology, including gene expression, angiogenesis, cell adhesion�…
insight into tumor pathophysiology, including gene expression, angiogenesis, cell adhesion�…
Reducing background fluorescence reveals adhesions in 3D matrices
KE Kubow, AR Horwitz�- Nature cell biology, 2011 - nature.com
To the editor: Adhesion complexes in cells growing on planar substrates have been studied
for over three decades. From these studies, several classes of adhesions have been�…
for over three decades. From these studies, several classes of adhesions have been�…
[HTML][HTML] Label-free colorectal cancer screening using deep learning and spatial light interference microscopy (SLIM)
Current pathology workflow involves staining of thin tissue slices, which otherwise would be
transparent, followed by manual investigation under the microscope by a trained pathologist�…
transparent, followed by manual investigation under the microscope by a trained pathologist�…
Pycro-Manager: open-source software for customized and reproducible microscope control
To the Editor—Cutting-edge innovations in biological microscopy are increasingly blurring
the line between data acquisition and data analysis. Computational microscopy and�…
the line between data acquisition and data analysis. Computational microscopy and�…
High-speed light-sheet microscopy for the in-situ acquisition of volumetric histological images of living tissue
Histological examinations typically require the excision of tissue, followed by its fixation,
slicing, staining, mounting and imaging, with timeframes ranging from minutes to days. This�…
slicing, staining, mounting and imaging, with timeframes ranging from minutes to days. This�…
[HTML][HTML] Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples
In 2015, we launched the mesoSPIM initiative, an open-source project for making light-sheet
microscopy of large cleared tissues more accessible. Meanwhile, the demand for imaging�…
microscopy of large cleared tissues more accessible. Meanwhile, the demand for imaging�…