[HTML][HTML] TrakEM2 software for neural circuit reconstruction
A key challenge in neuroscience is the expeditious reconstruction of neuronal circuits. For
model systems such as Drosophila and C. elegans, the limiting step is no longer the�…
model systems such as Drosophila and C. elegans, the limiting step is no longer the�…
Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes
MH Longair, DA Baker, JD Armstrong�- Bioinformatics, 2011 - academic.oup.com
Motivation: Advances in techniques to sparsely label neurons unlock the potential to
reconstruct connectivity from 3D image stacks acquired by light microscopy. We present an�…
reconstruct connectivity from 3D image stacks acquired by light microscopy. We present an�…
Semi-automated reconstruction of neural circuits using electron microscopy
Reconstructing neuronal circuits at the level of synapses is a central problem in
neuroscience, and the focus of the nascent field of connectomics. Previously used to�…
neuroscience, and the focus of the nascent field of connectomics. Previously used to�…
Automated reconstruction of a serial-section EM Drosophila brain with flood-filling networks and local realignment
Large-scale connectomic reconstruction of neural circuitry at single-synapse resolution is an
attractive target for improving understanding of the nervous system in health and disease�…
attractive target for improving understanding of the nervous system in health and disease�…
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain
Neural circuit reconstruction at single synapse resolution is increasingly recognized as
crucially important to decipher the function of biological nervous systems. Volume electron�…
crucially important to decipher the function of biological nervous systems. Volume electron�…
[HTML][HTML] Learning cellular morphology with neural networks
Reconstruction and annotation of volume electron microscopy data sets of brain tissue is
challenging but can reveal invaluable information about neuronal circuits. Significant�…
challenging but can reveal invaluable information about neuronal circuits. Significant�…
neuTube 1.0: a new design for efficient neuron reconstruction software based on the SWC format
Brain circuit mapping requires digital reconstruction of neuronal morphologies in
complicated networks. Despite recent advances in automatic algorithms, reconstruction of�…
complicated networks. Despite recent advances in automatic algorithms, reconstruction of�…
[HTML][HTML] Quantitative neuroanatomy for connectomics in Drosophila
CM Schneider-Mizell, S Gerhard, M Longair…�- Elife, 2016 - elifesciences.org
Neuronal circuit mapping using electron microscopy demands laborious proofreading or
reconciliation of multiple independent reconstructions. Here, we describe new methods to�…
reconciliation of multiple independent reconstructions. Here, we describe new methods to�…
Convolutional nets for reconstructing neural circuits from brain images acquired by serial section electron microscopy
Neural circuits can be reconstructed from brain images acquired by serial section electron
microscopy. Image analysis has been performed by manual labor for half a century, and�…
microscopy. Image analysis has been performed by manual labor for half a century, and�…
[HTML][HTML] Neuronal wiring diagram of an adult brain
Connections between neurons can be mapped by acquiring and analyzing electron
microscopic (EM) brain images. In recent years, this approach has been applied to chunks of�…
microscopic (EM) brain images. In recent years, this approach has been applied to chunks of�…