Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization
- PMID: 35662414
- DOI: 10.1016/j.cell.2022.05.006
Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization
Abstract
The mitochondrial genome encodes 13 components of the oxidative phosphorylation system, and altered mitochondrial transcription drives various human pathologies. A polyadenylated, non-coding RNA molecule known as 7S RNA is transcribed from a region immediately downstream of the light strand promoter in mammalian cells, and its levels change rapidly in response to physiological conditions. Here, we report that 7S RNA has a regulatory function, as it controls levels of mitochondrial transcription both in vitro and in cultured human cells. Using cryo-EM, we show that POLRMT dimerization is induced by interactions with 7S RNA. The resulting POLRMT dimer interface sequesters domains necessary for promoter recognition and unwinding, thereby preventing transcription initiation. We propose that the non-coding 7S RNA molecule is a component of a negative feedback loop that regulates mitochondrial transcription in mammalian cells.
Keywords: 7S RNA; POLRMT; SUV3; cryo-EM; dimer; mitochondria; mtDNA; mtEXO; non-coding RNA; transcription.
Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.
Conflict of interest statement
Declaration of interests C.M.G. is a scientific co-founder of Pretzel Therapeutics, and M.F. is a member of its scientific advisory board.
Comment in
-
ncRNA regulation of mitochondrial transcription.Nat Rev Mol Cell Biol. 2022 Aug;23(8):520. doi: 10.1038/s41580-022-00509-3. Nat Rev Mol Cell Biol. 2022. PMID: 35729218 No abstract available.
Similar articles
-
POLRMT regulates the switch between replication primer formation and gene expression of mammalian mtDNA.Sci Adv. 2016 Aug 5;2(8):e1600963. doi: 10.1126/sciadv.1600963. eCollection 2016 Aug. Sci Adv. 2016. PMID: 27532055 Free PMC article.
-
Suppression of mitochondrial transcription initiation complexes changes the balance of replication intermediates of mitochondrial DNA and reduces 7S DNA in cultured human cells.J Biochem. 2016 Jul;160(1):49-57. doi: 10.1093/jb/mvw010. Epub 2016 Feb 8. J Biochem. 2016. PMID: 26861994
-
Cryo-EM Structures Reveal Transcription Initiation Steps by Yeast Mitochondrial RNA Polymerase.Mol Cell. 2021 Jan 21;81(2):268-280.e5. doi: 10.1016/j.molcel.2020.11.016. Epub 2020 Dec 4. Mol Cell. 2021. PMID: 33278362 Free PMC article.
-
Mitochondrial transcription initiation: promoter structures and RNA polymerases.Curr Genet. 1995 Aug;28(3):205-16. doi: 10.1007/BF00309779. Curr Genet. 1995. PMID: 8529266 Review.
-
Human mitochondrial RNA polymerase: structure-function, mechanism and inhibition.Biochim Biophys Acta. 2012 Sep-Oct;1819(9-10):948-60. doi: 10.1016/j.bbagrm.2012.04.002. Epub 2012 Apr 19. Biochim Biophys Acta. 2012. PMID: 22551784 Review.
Cited by
-
Central dogma rates in human mitochondria.Hum Mol Genet. 2024 May 22;33(R1):R34-R41. doi: 10.1093/hmg/ddae036. Hum Mol Genet. 2024. PMID: 38779776 Review.
-
Human mtDNA-Encoded Long ncRNAs: Knotty Molecules and Complex Functions.Int J Mol Sci. 2024 Jan 25;25(3):1502. doi: 10.3390/ijms25031502. Int J Mol Sci. 2024. PMID: 38338781 Free PMC article. Review.
-
Light-strand bias and enriched zones of embedded ribonucleotides are associated with DNA replication and transcription in the human-mitochondrial genome.Nucleic Acids Res. 2024 Feb 9;52(3):1207-1225. doi: 10.1093/nar/gkad1204. Nucleic Acids Res. 2024. PMID: 38117983 Free PMC article.
-
Mitochondrial nucleic acids in innate immunity and beyond.Exp Mol Med. 2023 Dec;55(12):2508-2518. doi: 10.1038/s12276-023-01121-x. Epub 2023 Dec 1. Exp Mol Med. 2023. PMID: 38036728 Free PMC article. Review.
-
Mechanisms and regulation of human mitochondrial transcription.Nat Rev Mol Cell Biol. 2024 Feb;25(2):119-132. doi: 10.1038/s41580-023-00661-4. Epub 2023 Oct 2. Nat Rev Mol Cell Biol. 2024. PMID: 37783784 Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources