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A syntelog-based pan-genome provides insights into rice domestication and de-domestication
BackgroundAsian rice is one of the world’s most widely cultivated crops. Large-scale resequencing analyses have been undertaken to explore the...
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Lost genome segments associate with trait diversity during rice domestication
BackgroundDNA mutations of diverse types provide the raw material required for phenotypic variation and evolution. In the case of crop species,...
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Study on the origin of Asian cultivated rice based on 15 domestication regions
Cultivated rice ( Oryza sativa ) is an important food crop worldwide, and its domestication is one of the most important events in human history....
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Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?
As climate change intensifies, the development of resilient rice that can tolerate abiotic stresses is urgently needed. In nature, many wild plants...
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Characterization of Domestication Loci Associated with Awn Development in Rice
Rice ( Oryza sativa L.) is a widely studied domesticated model plant. Seed awning is an unfavorable trait during rice harvesting and processing....
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Multiple domestications of Asian rice
The origin of domesticated Asian rice ( Oryza sativa L.) has been controversial for more than half a century. The debates have focused on two leading...
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Early Domestication History of Asian Rice Revealed by Mutations and Genome-Wide Analysis of Gene Genealogies
BackgroundAsian rice (O ryza sativa L.) has been a model plant but its cultivation history is inadequately understood, and its origin still under...
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Increased stomatal conductance and leaf biochemical capacity, not mesophyll conductance, contributing to the enhanced photosynthesis in Oryza plants during domestication
Main conclusionLeaf biochemical capacity and the ratio of leaf biochemical capacity to stomatal conductance are promising to enhance leaf...
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DNA methylation variations underlie lettuce domestication and divergence
BackgroundLettuce ( Lactuca sativa L. ) is an economically important vegetable crop worldwide. Lettuce is believed to be domesticated from a single...
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Substitution Mapping and Allelic Variations of the Domestication Genes from O. rufipogon and O. nivara
BackgroundDomestication from wild rice species to cultivated rice is a key milestone, which involved changes of many specific traits and the...
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Increased DNA methylation contributes to the early ripening of pear fruits during domestication and improvement
BackgroundDNA methylation is an essential epigenetic modification. However, its contribution to trait changes and diversity in the domestication of...
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Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS
BackgroundRice is the world’s second largest food crop and accelerated global climate change due to the intensification of human activities has a...
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Rice domestication influences the composition and function of the rhizosphere bacterial chemotaxis systems
AimsSpecific soil bacteria can sense and respond to the selective rhizosphere recruitment of root exudates using unique systems of chemotaxis that...
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Domestication affects nitrogen use efficiency in foxtail millet
Enhancing nitrogen use efficiency (NUE) in crops, particularly under limited nitrogen availability, is pivotal for advancing sustainable agricultural...
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A Synthetic Microbiome Based on Dominant Microbes in Wild Rice Rhizosphere to Promote Sulfur Utilization
Sulfur (S) is one of the main components of important biomolecules, which has been paid more attention in the anaerobic environment of rice...
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Accelerating crop domestication through genome editing for sustainable agriculture
With the establishment of human civilization, wild plant species were domesticated and cultivated at their centres of origin and further disseminated...
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Genetic architecture and molecular regulation of sorghum domestication
Over time, wild crops have been domesticated by humans, and the knowledge gained from parallel selection and convergent domestication-related studies...
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Asymmetric and parallel subgenome selection co-shape common carp domestication
BackgroundThe common carp ( Cyprinus carpio ) might best represent the domesticated allopolyploid animals. Although subgenome divergence which is...
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Epigenetic differences between wild and cultivated grapevines highlight the contribution of DNA methylation during crop domestication
The domestication process in grapevines has facilitated the fixation of desired traits. Nowadays, vegetative propagation through cuttings enables...
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Successful domestication of Neonothopanus Hygrophanus (Mont.) De Kesel & Degreef and Lentinus Squarrosulus Mont., indigenous saprophytic edible mushrooms from Kibira National Park in Burundi
BackgroundMushroom cultivation in Burundi provides an excellent way to diversify agricultural production although domestication of mushroom species...
