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  1. A comparison of the TempO-Seq and Affymetrix microarray platform using RTqPCR validation

    Next-generation risk assessment relies on mechanistic data from new approach methods, including transcriptome data. Various technologies, such as...

    Matthias M. Wehr, Stella Marie Reamon-Buettner, ... Sylvia E. Escher in BMC Genomics
    Article Open access 03 July 2024
  2. Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

    Large compendia of gene expression data have proven valuable for the discovery of novel biological relationships. Historically, most available RNA...

    Steven M. Foltz, Casey S. Greene, Jaclyn N. Taroni in Communications Biology
    Article Open access 25 February 2023
  3. Feature-specific quantile normalization and feature-specific mean–variance normalization deliver robust bi-directional classification and feature selection performance between microarray and RNAseq data

    Background

    Cross-platform normalization seeks to minimize technological bias between microarray and RNAseq whole-transcriptome data. Incorporating...

    Daniel Skubleny, Sunita Ghosh, ... Gina R. Rayat in BMC Bioinformatics
    Article Open access 29 March 2024
  4. MicroRNA Expression Profiling Using Agilent One-Color Microarray

    MicroRNA (miRNA) expression profiling is an important tool to identify miRNA regulation in physiological or pathological states. This technique has a...
    Carmela Dell’Aversana, Giulia Sgueglia, ... Lucia Altucci in MicroRNA Profiling
    Protocol 2023
  5. Microarray Data Analysis Protocol

    Microarrays are broadly used in the omic investigation and have several areas of applications in biology and medicine, providing a significant amount...
    Giuseppe Agapito, Mariamena Arbitrio in Microarray Data Analysis
    Protocol 2022
  6. DNA Microarray

    Microarray is a hybridization-based technique where a greater number of genes can be studied at a time. Each microchamber will be allotted to...
    Protocol 2022
  7. Web and Cloud Computing to Analyze Microarray Data

    Microarray technology is a high-throughput technique that can simultaneously measure hundreds of thousands of genes’ expression levels. Web and cloud...
    Barbara Calabrese in Microarray Data Analysis
    Protocol 2022
  8. Microarray data analysis of antileukemic action of Cinnamoylated benzaldehyde LQB-461 in Jurkat cell line

    Background

    Leukemias stand out for being the main type of childhood cancer in the world. Current treatments have strong side effects for patients, and...

    Rachell R. C. Thimoteo, Pedro Nicolau Neto, ... Graça Justo in Molecular Biology Reports
    Article 25 January 2024
  9. Microarray Data Preprocessing: From Experimental Design to Differential Analysis

    DNA microarray data preprocessing is of utmost importance in the analytical path starting from the experimental design and leading to a reliable...
    Antonio Federico, Laura Aliisa Saarimäki, ... Dario Greco in Microarray Data Analysis
    Protocol 2022
  10. IgE and IgG4 Epitope Mapping of Food Allergens with a Peptide Microarray Immunoassay

    Peptide microarrays are a powerful tool to identify linear epitopes of food allergens in a high-throughput manner. The main advantages of the...
    Javier Martínez-Botas, Carlos Fernández-Lozano, ... Belén de la Hoz in Peptide Microarrays
    Protocol 2023
  11. Algorithms to Preprocess Microarray Image Data

    Microarray is a powerful technology that enables the monitoring of expression levels for thousands of genes simultaneously, providing scientists with...
    Paolo Zaffino, Maria Francesca Spadea in Microarray Data Analysis
    Protocol 2022
  12. High-Performance Framework to Analyze Microarray Data

    Pharmacogenomics is an important research field that studies the impact of genetic variation of patients on drug responses, looking for correlations...
    Fabrizio Marozzo, Loris Belcastro in Microarray Data Analysis
    Protocol 2022
  13. Integration of DNA Microarray with Clinical and Genomic Data

    DNA microarrays have been widely employed to understand cancer development. This technology is able to measure expression levels of a large numbers...
    Francesca Scionti, Mariamena Arbitrio, ... Maria Teresa Di Martino in Microarray Data Analysis
    Protocol 2022
  14. Immunoblot Analysis from Single Cells Using Milo™ Single-Cell Western Platform

    In this new era of precision medicine, characterization of single-cell subpopulations to better understand disease etiology is paramount. It is thus...
    Prashant V. Thakkar in Single Cell Analysis
    Protocol 2024
  15. Clustering Methods for Microarray Data Sets

    Microarrays are experimental methods that can provide information about gene expression and SNP data that hold great potential for new understanding,...
    Giuseppe Agapito, Giuseppe Fedele in Microarray Data Analysis
    Protocol 2022
  16. Supervised Methods for Biomarker Detection from Microarray Experiments

    Biomarkers are valuable indicators of the state of a biological system. Microarray technology has been extensively used to identify biomarkers and...
    Angela Serra, Luca Cattelani, ... Dario Greco in Microarray Data Analysis
    Protocol 2022
  17. Pathway Enrichment Analysis of Microarray Data

    Microarray analyses usually result in a list of differential genes that need to be annotated to link them the phenotype being studied, help planning...
    Chiara Pastrello, Yun Niu, Igor Jurisica in Microarray Data Analysis
    Protocol 2022
  18. General Strategies for Glycan Microarray Data Processing and Analysis

    Glycan microarrays provide a high-throughputHigh-throughput technology for rapidly profilingProfiling interactions between carbohydrates and...
    J. Sebastian Temme, Jeffrey C. Gildersleeve in Glycan Microarrays
    Protocol 2022
  19. A Microarray Analysis Technique Using a Self-Organizing Multiagent Approach

    Microarray technology is fully established among the research fields in genetic domain. Academia and industrial researchers investigate and analyze...
    Agostino Forestiero, Giuseppe Papuzzo, ... Rosa Varchera in Microarray Data Analysis
    Protocol 2022
  20. A platform-independent AI tumor lineage and site (ATLAS) classifier

    Histopathologic diagnosis and classification of cancer plays a critical role in guiding treatment. Advances in next-generation sequencing have...

    Nicholas R. Rydzewski, Yue Shi, ... Shuang G. Zhao in Communications Biology
    Article Open access 13 March 2024
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