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FISH painting for chromosome identification of aneuploid cauliflower (Brassica oleracea L. var. botrytis)
A common problem in the cultivation and breeding of cauliflower ( Brassica oleracea L. var. botrytis ) is the occurrence of aneuploids in offspring...
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Proposal of Streptomyces bellus Margalith and Beretta 1960 as a Later Heterotypic Synonym of Streptomyces coeruleorubidus (Preobrazhenskaya 1957) Pridham et al. 1958 and an Emended Description of Streptomyces coeruleorubidus
In the present work, the taxonomic relationship between Streptomyces coeruleorubidus and Streptomyces bellus was reevaluated by a comprehensive...
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Actinomycetospora termitidis sp. nov., an insect-derived actinomycete isolated from termite (Odontotermes formosanus)
Strain Odt1-22 T , an insect-derived actinomycete was isolated from a termite ( Odontotermes formosanus ) that was collected from Chanthaburi province,...
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Overall Genome Relatedness Indices: Interpretation and Defining New Taxonomic Ranks
DNA-DNA hybridization (DDH) has been used as the gold standard in prokaryote taxonomy, but it is labor-intensive and prone to experimental errors....
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Fast Alignment
We’ve seen that optimal alignment is slow but accurate while exact matching is fast but cannot account for mutations. In this Chapter we tweak exact...
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Fast Alignment
We change into the directory for chapters, make the directory for this chapter, change into that, make the directory for this section, and change...
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Comparative Analyses of Bacteriophage Genomes
Bacterial viruses (bacteriophages or phages) are the most abundant and diverse biological entities on Earth. There is a renewed worldwide interest in...
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Sequenzbasierte Klassifizierung und Identifizierung von Prokaryoten
Die Bioinformatik ist wichtig für die Klassifizierung und Identifizierung, da alle Prokaryoten auf der Grundlage der Phylogenie der...
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Nanopore-Based Long-Read Sequencing Technology to Obtain Highly Contiguous Whole-Genome Sequence of Actinobacterial Genomes like Streptomyces Sp.: A Complete Guide for Actinobacterial Whole Genome Sequencing Project Using Nanopore
The “postgenomic era” will be dominated by long-read technologies like Oxford Nanopore technology and Pacific Biosystem’s single-molecule real-time...
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Maast: genotyping thousands of microbial strains efficiently
Existing single nucleotide polymorphism (SNP) genotyping algorithms do not scale for species with thousands of sequenced strains, nor do they account...
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Comparative genomics and host range analysis of four Ralstonia pseudosolanacearum strains isolated from sunflower reveals genomic and phenotypic differences
BackgroundBacterial wilt caused by Ralstonia solanacearum species complex (RSSC) is one of the devastating diseases in crop production, seriously...
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E. urophylla × E. grandis high-quality genome and comparative genomics provide insights on evolution and diversification of eucalyptus
BackgroundEucalyptus urophylla × Eucalyptus grandis , an economically important forest tree, provides important raw material for energy and reduces...
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Chromosome-level genome assembly provides insights into the genetic diversity, evolution, and flower development of Prunus conradinae
Prunus conradinae , a valuable flowering cherry belonging to the Rosaceae family subgenus Cerasus and endemic to China, has high economic and...
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Phylogenetic Analysis of Bacterial Pathogen Genomes
The development of high-throughput sequencing technology has led to a significant reduction in the time and cost of sequencing whole genomes of...
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Sequence-Based Classification and Identification
You will be introduced to the classification of prokaryotes from species to the higher levels of class and phyla. You will learn that the 16S rRNA...
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Multiple genome alignment in the telomere-to-telomere assembly era
With the arrival of telomere-to-telomere (T2T) assemblies of the human genome comes the computational challenge of efficiently and accurately...
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A systematic comparison of human mitochondrial genome assembly tools
BackgroundMitochondria are the cell organelles that produce most of the chemical energy required to power the cell's biochemical reactions. Despite...
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Chromosome-level genome assembly of Hippophae tibetana provides insights into high-altitude adaptation and flavonoid biosynthesis
BackgroundAs an endemic shrub of the Qinghai-Tibetan Plateau (QTP), the distribution of Hippophae tibetana Schlecht. ranges between 2800 and 5200 m...
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Genome-based classification of Streptomyces anatolicus sp. nov., an actinobacterium with antimicrobial and cytotoxic activities, and reclassification of Streptomyces nashvillensis as a later heterotypic synonym of Streptomyces tanashiensis
During the course of isolating novel actinobacteria producing bioactive metabolites, strain BG9H T was obtained from an arid soil sample in Erzurum,...
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Neobavaisoflavone Inhibits Biofilm Formation and α-Toxin Activity of Staphylococcus aureus
Neobavaisoflavone had antimicrobial activities against Gram-positive multidrug-resistant (MDR) bacteria, but the effect of neobavaisoflavone on the...
