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Genetic insights into crossbred dairy cattle of Pakistan: exploring allele frequency, linkage disequilibrium, and effective population size at a genome-wide scale
Linkage disequilibrium (LD) affects genomic studies accuracy. High-density genotyping platforms identify SNPs across animal genomes, increasing LD...
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Genotyping-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato
Key messageDe novo genotyping in potato using methylation-sensitive GBS discovers SNPs largely confined to genic or gene-associated regions and...
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Molecular genetic diversity and linkage disequilibrium structure of the Egyptian faba bean using Single Primer Enrichment Technology (SPET)
Faba bean is an important legume crop. The genetic diversity among faba bean genotypes is very important for the genetic improvement of target...
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Monitoring and Quantification of the Dynamics of Stress Granule Components in Living Cells by Fluorescence Decay After Photoactivation
Stress granules (SGs) are cytosolic, nonmembranous RNA-protein (RNP) complexes that form in the cytosol of many cells under various stress conditions...
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Identification of novel loci for flowering time in mungbean [Vigna radiata (L.) R. Wilczek] using genome-wide association study
BackgroundFlowering time is an important crop trait. Mungbean flowers do not flower simultaneously, leading to asynchronous pod maturity and...
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LDscaff: LD-based scaffolding of de novo genome assemblies
BackgroundGenome assembly is fundamental for de novo genome analysis. Hybrid assembly, utilizing various sequencing technologies increases both...
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Genetic characterisation of the Connemara pony and the Warmblood horse using a within-breed clustering approach
BackgroundThe Connemara pony (CP) is an Irish breed that has experienced varied selection by breeders over the last fifty years, with objectives...
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Association mapping of selected oil palm germplasm reveals novel and known genomic regions influencing vegetative and bunch component traits
A genome-wide association Study (GWAS) detects linkages between markers and traits of interest for application in genomics-guided breeding. This...
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Adipocyte IRE1α promotes PGC1α mRNA decay and restrains adaptive thermogenesis
Adipose tissue undergoes thermogenic remodeling in response to thermal stress and metabolic cues, playing a crucial role in regulating energy...
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Genotyping SNPs in lignin biosynthesis gene (CAD1) and transcription factors (MYB1 and MYB2) exhibits association with wood density in teak (Tectona grandis L.f.)
BackgroundTeak ( Tectona grandis L.f.), an important source of tropical timber with immense economic value, is a highly outcrossing forest tree...
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Interpretation of Manhattan Plots and Other Outputs of Genome-Wide Association Studies
With increasing marker density, estimation of recombination rate between a marker and a causal mutation using linkage analysis becomes less...
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Patterns of genomic diversity and linkage disequilibrium across the disjunct range of the Australian forest tree Eucalyptus globulus
The evolutionary trajectory of a population both influences and is influenced by characteristics of its genome. A disjunct population, for example is...
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Genome-wide survey identified superior and rare haplotypes for plant height in the north-eastern soybean germplasm of China
The proper and efficient utilization of natural genetic diversity can significantly impact crop improvements. Plant height is a quantitative trait...
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Genetic diversity and population structure of rice (Oryza sativa L.) landraces from Kerala, India analyzed through genotyping-by-sequencing
Researchers stand at the vanguard of advancement and application of next-generation sequencing technology for developing dominant strategies for the...
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Effective population size in field pea
BackgroundEffective population size ( N e ) is a pivotal parameter in population genetics as it can provide information on the rate of inbreeding and...
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Genome-wide association and targeted transcriptomic analyses reveal loci and candidate genes regulating preharvest sprouting in barley
Key messageGenome-wide association study of diverse barley genotypes identified loci, single nucleotide polymorphisms and candidate genes that...
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Plant species- and stage-specific differences in microbial decay of mangrove leaf litter: the older the better?
Leaf litter and its breakdown products represent an important input of organic matter and nutrients to mangrove sediments and adjacent coastal...
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Association genetics of wood traits in European black poplar (Populus nigra L.)
An association genetics approach was used to examine individual genes and alleles at several loci responsible for complex traits controlling wood...
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Genomic prediction models for traits differing in heritability for soybean, rice, and maize
BackgroundGenomic selection is a powerful tool in plant breeding. By building a prediction model using a training set with markers and phenotypes,...
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GWAS and bulked segregant analysis reveal the Loci controlling growth habit-related traits in cultivated Peanut (Arachis hypogaea L.)
BackgroundPeanut ( Arachis hypogaea L.) is a grain legume crop that originated from South America and is now grown around the world. Peanut growth...
