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  1. Predictor bias in genomic and phenomic selection

    Key message

    NIRS of wheat grains as phenomic predictors for grain yield show inflated prediction ability and are biased toward grain protein content.

    ...
    Hermann Gregor Dallinger, Franziska Löschenberger, ... Hermann Buerstmayr in Theoretical and Applied Genetics
    Article Open access 25 October 2023
  2. PPSNO: A Feature-Rich SNO Sites Predictor by Stacking Ensemble Strategy from Protein Sequence-Derived Information

    The protein S-nitrosylation (SNO) is a significant post-translational modification that affects the stability, activity, cellular localization, and...

    Lun Zhu, Liuyang Wang, ... Sen Yang in Interdisciplinary Sciences: Computational Life Sciences
    Article 11 January 2024
  3. Breeding value predictive accuracy for scarcely recorded traits in a Eucalyptus grandis breeding population using genomic selection and data on predictor traits

    Genomic selection methods are particularly useful for traits that are difficult or expensive to measure. We investigated the impact of using...

    Esteban J. Jurcic, Pamela V. Villalba, ... Eduardo P. Cappa in Tree Genetics & Genomes
    Article 18 July 2023
  4. A Computational Predictor for Accurate Identification of Tumor Homing Peptides by Integrating Sequential and Deep BiLSTM Features

    Cancer remains a severe illness, and current research indicates that tumor homing peptides (THPs) play an important part in cancer therapy. The...

    Roha Arif, Sameera Kanwal, ... Muhammad Kabir in Interdisciplinary Sciences: Computational Life Sciences
    Article 11 May 2024
  5. Gdaphen, R pipeline to identify the most important qualitative and quantitative predictor variables from phenotypic data

    Background

    In individuals or animals suffering from genetic or acquired diseases, it is important to identify which clinical or phenotypic variables...

    Maria del Mar Muñiz Moreno, Claire Gavériaux-Ruff, Yann Herault in BMC Bioinformatics
    Article Open access 26 January 2023
  6. Leaf toughness is a better predictor of herbivory and plant performance than leaf mass per area (LMA) in temperate evergreens

    The mechanical strengthening of leaves protects seedlings from herbivore damage, particularly in shade-tolerant evergreens. Interspecific studies...

    Ernesto Gianoli, Cristian Salgado-Luarte, ... Gisela C. Stotz in Evolutionary Ecology
    Article 17 April 2024
  7. Unified mRNA Subcellular Localization Predictor based on machine learning techniques

    Background

    The mRNA subcellular localization bears substantial impact in the regulation of gene expression, cellular migration, and adaptation....

    Saleh Musleh, Muhammad Arif, ... Tanvir Alam in BMC Genomics
    Article Open access 07 February 2024
  8. Exploring component traits of biomass and yield in Indian rice mini-core germplasm

    Rice is an essential food grain for more than half of the global population. To ensure food security, improvement in the genetic gain in yield is...

    Chandrapal Vishwakarma, Sourabh Karwa, ... Viswanathan Chinnusamy in Plant Physiology Reports
    Article 26 April 2024
  9. Better together: integrating mist-nets and bioacoustics reveals large-scale native vegetation as a key predictor of bat community conservation in a fragmented landscape

    Habitat loss, fragmentation, and land conversion for human use are currently the main drivers of biodiversity loss in the Neotropics. Agropastoral...

    Matheus Camargo Silva Mancini, Paulo Estefano Dineli Bobrowiec, ... Renato Gregorin in Biodiversity and Conservation
    Article 25 March 2024
  10. Quantifying the stochastic component of epigenetic aging

    DNA methylation clocks can accurately estimate chronological age and, to some extent, also biological age, yet the process by which age-associated...

    Huige Tong, Varun B. Dwaraka, ... Andrew E. Teschendorff in Nature Aging
    Article Open access 09 May 2024
  11. PC3T: a signature-driven predictor of chemical compounds for cellular transition

    Cellular transitions hold great promise in translational medicine research. However, therapeutic applications are limited by the low efficiency and...

    Lu Han, Bin Song, ... Wenxia Zhou in Communications Biology
    Article Open access 27 September 2023
  12. Multi-ancestry phenome-wide association of complement component 4 variation with psychiatric and brain phenotypes in youth

    Background

    Increased expression of the complement component 4A ( C4A ) gene is associated with a greater lifetime risk of schizophrenia. In the brain, C4A...

    Leanna M. Hernandez, Minsoo Kim, ... Michael J. Gandal in Genome Biology
    Article Open access 07 March 2023
  13. DePolymerase Predictor (DePP): a machine learning tool for the targeted identification of phage depolymerases

    Biofilm production plays a clinically significant role in the pathogenicity of many bacteria, limiting our ability to apply antimicrobial agents and...

    Damian J. Magill, Timofey A. Skvortsov in BMC Bioinformatics
    Article Open access 19 May 2023
  14. Nuclear protein NOP2 serves as a poor-prognosis predictor of LUAD and aggravates the malignancy of lung adenocarcinoma cells

    Recent studies have shown that NOP2, a nucleolar protein, is up-regulated in various cancers, suggesting a potential link to tumor aggressiveness and...

    Weizhuo Qin, Gaoqiang Fei, ... Pingmin Wei in Functional & Integrative Genomics
    Article 15 March 2024
  15. Metabolic signatures in human follicular fluid identify lysophosphatidylcholine as a predictor of follicular development

    In order to investigate the metabolic characteristics of human follicular fluid (FF) and to reveal potential metabolic predictors of follicular...

    Jihong Yang, Yangbai Li, ... Yun Qian in Communications Biology
    Article Open access 29 July 2022
  16. Plant genus is a better predictor of plant effects on soil biotic and abiotic properties than plant invasion status

    Increasing evidence suggests that plant invasions are promoted by altered plant-soil interactions. However, we still lack studies exploring...

    Věra Hanzelková, Anna Florianová, ... Zuzana Münzbergová in Biological Invasions
    Article 23 September 2023
  17. Microbiome composition as a potential predictor of longevity in rabbits

    Background

    Longevity and resilience are two fundamental traits for more sustainable livestock production. These traits are closely related, as...

    Iliyass Biada, Noelia Ibáñez-Escriche, ... Maria A. Santacreu in Genetics Selection Evolution
    Article Open access 02 April 2024
  18. Genetic variability, characters association and principal component study for morphological and fodder quality of Opuntia and Nopalea sp. in India

    A morphological and quality analysis of 64 global core collections of cactus genotypes was conducted using 30 growth and fodder quality traits....

    Rahul Dev, Shamsudheen Mangalassery, ... Sawsan Hassan in Genetic Resources and Crop Evolution
    Article Open access 03 November 2023
  19. Objectives of Inference for Stochastic Models

    Throughout this book, we have been using the pseudonym GLMMs to denote generalized linear mixed models. The common denominator among all these models...
    Josafhat Salinas Ruíz, Osval Antonio Montesinos López, ... Jose Crossa Hiriart in Generalized Linear Mixed Models with Applications in Agriculture and Biology
    Chapter Open access 2023
  20. RETRACTED ARTICLE: Detection of HPV16 viral load in L2 gene as a related predictor of cervical cancer among women in Dhi-Qar province by qRT-PCR

    Background

    The most common infection among young women that increases the risk of developing cervical cancer (CC) is human papillomavirus (HPV). In...

    Abduladheem Turki Jalil, Muhammad Usman Faryad Khan, ... Aleksandr Karevskiy in Molecular Biology Reports
    Article 10 October 2022
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