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Predictor bias in genomic and phenomic selection
Key messageNIRS of wheat grains as phenomic predictors for grain yield show inflated prediction ability and are biased toward grain protein content.
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PPSNO: A Feature-Rich SNO Sites Predictor by Stacking Ensemble Strategy from Protein Sequence-Derived Information
The protein S-nitrosylation (SNO) is a significant post-translational modification that affects the stability, activity, cellular localization, and...
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Breeding value predictive accuracy for scarcely recorded traits in a Eucalyptus grandis breeding population using genomic selection and data on predictor traits
Genomic selection methods are particularly useful for traits that are difficult or expensive to measure. We investigated the impact of using...
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A Computational Predictor for Accurate Identification of Tumor Homing Peptides by Integrating Sequential and Deep BiLSTM Features
Cancer remains a severe illness, and current research indicates that tumor homing peptides (THPs) play an important part in cancer therapy. The...
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Gdaphen, R pipeline to identify the most important qualitative and quantitative predictor variables from phenotypic data
BackgroundIn individuals or animals suffering from genetic or acquired diseases, it is important to identify which clinical or phenotypic variables...
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Leaf toughness is a better predictor of herbivory and plant performance than leaf mass per area (LMA) in temperate evergreens
The mechanical strengthening of leaves protects seedlings from herbivore damage, particularly in shade-tolerant evergreens. Interspecific studies...
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Unified mRNA Subcellular Localization Predictor based on machine learning techniques
BackgroundThe mRNA subcellular localization bears substantial impact in the regulation of gene expression, cellular migration, and adaptation....
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Exploring component traits of biomass and yield in Indian rice mini-core germplasm
Rice is an essential food grain for more than half of the global population. To ensure food security, improvement in the genetic gain in yield is...
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Better together: integrating mist-nets and bioacoustics reveals large-scale native vegetation as a key predictor of bat community conservation in a fragmented landscape
Habitat loss, fragmentation, and land conversion for human use are currently the main drivers of biodiversity loss in the Neotropics. Agropastoral...
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Quantifying the stochastic component of epigenetic aging
DNA methylation clocks can accurately estimate chronological age and, to some extent, also biological age, yet the process by which age-associated...
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PC3T: a signature-driven predictor of chemical compounds for cellular transition
Cellular transitions hold great promise in translational medicine research. However, therapeutic applications are limited by the low efficiency and...
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Multi-ancestry phenome-wide association of complement component 4 variation with psychiatric and brain phenotypes in youth
BackgroundIncreased expression of the complement component 4A ( C4A ) gene is associated with a greater lifetime risk of schizophrenia. In the brain, C4A...
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DePolymerase Predictor (DePP): a machine learning tool for the targeted identification of phage depolymerases
Biofilm production plays a clinically significant role in the pathogenicity of many bacteria, limiting our ability to apply antimicrobial agents and...
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Nuclear protein NOP2 serves as a poor-prognosis predictor of LUAD and aggravates the malignancy of lung adenocarcinoma cells
Recent studies have shown that NOP2, a nucleolar protein, is up-regulated in various cancers, suggesting a potential link to tumor aggressiveness and...
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Metabolic signatures in human follicular fluid identify lysophosphatidylcholine as a predictor of follicular development
In order to investigate the metabolic characteristics of human follicular fluid (FF) and to reveal potential metabolic predictors of follicular...
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Plant genus is a better predictor of plant effects on soil biotic and abiotic properties than plant invasion status
Increasing evidence suggests that plant invasions are promoted by altered plant-soil interactions. However, we still lack studies exploring...
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Microbiome composition as a potential predictor of longevity in rabbits
BackgroundLongevity and resilience are two fundamental traits for more sustainable livestock production. These traits are closely related, as...
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Genetic variability, characters association and principal component study for morphological and fodder quality of Opuntia and Nopalea sp. in India
A morphological and quality analysis of 64 global core collections of cactus genotypes was conducted using 30 growth and fodder quality traits....
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Objectives of Inference for Stochastic Models
Throughout this book, we have been using the pseudonym GLMMs to denote generalized linear mixed models. The common denominator among all these models... -
RETRACTED ARTICLE: Detection of HPV16 viral load in L2 gene as a related predictor of cervical cancer among women in Dhi-Qar province by qRT-PCR
BackgroundThe most common infection among young women that increases the risk of developing cervical cancer (CC) is human papillomavirus (HPV). In...