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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
BackgroundThe Atribacterota are widely distributed in the subsurface biosphere. Recently, the first Atribacterota isolate was described and the...
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Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments
BackgroundMangrove wetlands are coastal ecosystems with important ecological features and provide habitats for diverse microorganisms with key roles...
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Functional similarity, despite taxonomical divergence in the millipede gut microbiota, points to a common trophic strategy
BackgroundMany arthropods rely on their gut microbiome to digest plant material, which is often low in nitrogen but high in complex polysaccharides....
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Metagenomic characterization of a novel non-ammonia-oxidizing Thaumarchaeota from hadal sediment
BackgroundThe hadal sediment, found at an ocean depth of more than 6000 m, is geographically isolated and under extremely high hydrostatic pressure,...
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The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing
BackgroundThe fecal microbiota in pancreatic ductal adenocarcinoma (PDAC) and in autoimmune pancreatitis (AIP) patients remains largely unknown. We...
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Analysis of the anaerobic digestion metagenome under environmental stresses stimulating prophage induction
BackgroundThe viral community has the potential to influence the structure of the microbiome and thus the yield of the anaerobic digestion process....
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Physiological versatility of ANME-1 and Bathyarchaeotoa-8 archaea evidenced by inverse stable isotope labeling
BackgroundThe trophic strategy is one key principle to categorize microbial lifestyles, by broadly classifying microorganisms based on the...
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Syntrophic acetate oxidation replaces acetoclastic methanogenesis during thermophilic digestion of biowaste
BackgroundAnaerobic digestion (AD) is a globally important technology for effective waste and wastewater management. In AD, microorganisms interact...
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The majority of microorganisms in gas hydrate-bearing subseafloor sediments ferment macromolecules
BackgroundGas hydrate-bearing subseafloor sediments harbor a large number of microorganisms. Within these sediments, organic matter and...
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The gastrointestinal microbiome in dairy cattle is constrained by the deterministic driver of the region and the modified effect of diet
BackgroundDairy cattle ( Bos taurus ), especially Holstein cows, which are the highest-producing dairy animals and are widely bred to provide milk...
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Stratified microbial communities in Australia’s only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cycling
BackgroundAnchialine environments, in which oceanic water mixes with freshwater in coastal aquifers, are characterised by stratified water columns...
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Sulfur-cycling chemolithoautotrophic microbial community dominates a cold, anoxic, hypersaline Arctic spring
BackgroundGypsum Hill Spring, located in Nunavut in the Canadian High Arctic, is a rare example of a cold saline spring arising through thick...
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Microbial river-to-sea continuum: gradients in benthic and planktonic diversity, osmoregulation and nutrient cycling
BackgroundCoastal aquatic ecosystems include chemically distinct, but highly interconnected environments. Across a freshwater-to-marine transect,...
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Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin
BackgroundPermanently stratified lakes contain diverse microbial communities that vary with depth and so serve as useful models for studying the...
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Aerobic anoxygenic phototrophs play important roles in nutrient cycling within cyanobacterial Microcystis bloom microbiomes
BackgroundDuring the bloom season, the colonial cyanobacterium Microcystis forms complex aggregates which include a diverse microbiome within an...
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Gut microbial metabolites SCFAs and chronic kidney disease
The global incidence of Chronic Kidney Disease (CKD) is steadily escalating, with discernible linkage to the intricate terrain of intestinal...
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Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism
BackgroundBiofilms in sulfide-rich springs present intricate microbial communities that play pivotal roles in biogeochemical cycling. We studied...
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Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits
BackgroundWhen deep-sea hydrothermal fluids mix with cold oxygenated fluids, minerals precipitate out of solution and form hydrothermal deposits....
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Novel trends of genome evolution in highly complex tropical sponge microbiomes
BackgroundTropical members of the sponge genus Ircinia possess highly complex microbiomes that perform a broad spectrum of chemical processes that...
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Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem
Methanogenesis, a biological process mediated by complex microbial communities, has attracted great attention due to its contribution to global...
