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  1. Metagenomic characterization of a novel non-ammonia-oxidizing Thaumarchaeota from hadal sediment

    Background

    The hadal sediment, found at an ocean depth of more than 6000 m, is geographically isolated and under extremely high hydrostatic pressure,...

    Ru-Yi Zhang, Yan-Ren Wang, ... Zhe-Xue Quan in Microbiome
    Article Open access 08 January 2024
  2. Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes

    Background

    Mangrove ecosystems are considered as hot spots of biogeochemical cycling, yet the diversity, function and coupling mechanism of...

    Lu Qian, Xiaoli Yu, ... Zhili He in Microbiome
    Article Open access 05 April 2023
  3. Phenotype of Urine Sediment Cells in Patients with Bladder Cancer

    Phenotype of urine sediment cells were studied in patients with bladder cancer depending on the cancer stage and recurrence prognosis. In T1N0M0...

    R. A. Zukov, A. A. Savchenko, ... A. V. Mazaev in Bulletin of Experimental Biology and Medicine
    Article 01 February 2023
  4. Perfluorodecalin allows resuspension and prevents sediment solidification of extended-release drug formulations in primary packaging

    In this technical note we show with two simple experiments how Perfluorodecalin (PFD), an injectable perfluorocarbon, can be used as an agent for...

    Daniel Primavessy, Sarah Büttner, Sigrid Saaler-Reinhardt in Drug Delivery and Translational Research
    Article Open access 04 May 2024
  5. New insights into bioaugmented removal of sulfamethoxazole in sediment microcosms: degradation efficiency, ecological risk and microbial mechanisms

    Background

    Bioaugmentation has the potential to enhance the ability of ecological technology to treat sulfonamide-containing wastewater, but the low...

    Jianfei Chen, Xiuli Chen, ... Shuguang Xie in Microbiome
    Article Open access 29 February 2024
  6. Microbe-driven elemental cycling enables microbial adaptation to deep-sea ferromanganese nodule sediment fields

    Background

    Ferromanganese nodule-bearing deep-sea sediments cover vast areas of the ocean floor, representing a distinctive habitat in the abyss....

    Dechao Zhang, Xudong Li, ... Jinshui Zheng in Microbiome
    Article Open access 25 July 2023
  7. Microbial functional genes are driven by gradients in sediment stoichiometry, oxygen, and salinity across the Baltic benthic ecosystem

    Background

    Microorganisms in the seafloor use a wide range of metabolic processes, which are coupled to the presence of functional genes within their...

    Elias Broman, Dandan Izabel-Shen, ... Francisco J. A. Nascimento in Microbiome
    Article Open access 15 August 2022
  8. Distribution of organochlorine pesticide pollution in water, sediment, mollusk, and fish at Saguling Dam, West Java, Indonesia

    This study aims to determine the distribution of organochlorine pesticide pollution in water, sediments, mollusks, and fish at Saguling Dam as...

    Katharina Oginawati, Septian Hadi Susetyo, ... Siti Rozaimah Sheikh Abdullah in Toxicological Research
    Article 20 March 2021
  9. Aryl-enclosed polyketides from mangrove sediment associated bacterium Bacillus amyloliquefaciens attenuating pro-inflammatory 5-lipoxygenase

    Two aryl-enclosed polyketides were identified from the ethyl acetate extract of mangrove sediment associated bacterium Bacillus amyloliquefaciens ,...

    Kajal Chakraborty, Lakshmi Rajan, Prima Francis in Medicinal Chemistry Research
    Article 28 August 2020
  10. Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments

    Background

    Freshwater sediment microbes are crucial decomposers that play a key role in regulating biogeochemical cycles and greenhouse gas emissions....

    Xiaotian Zhou, Jay T. Lennon, ... Aidong Ruan in Microbiome
    Article Open access 26 August 2023
  11. Telomerase Activity Analysis In Urine Sediment for Bladder Cancer

    Bladder cancer with an incidence of 15 cases per 100,000 persons in the global population is the most common tumor of the urinary tract. Imaging...
    Valentina Casadio, Sara Bravaccini in Urinary Biomarkers
    Protocol 2021
  12. Noisy Waters Hamper the Pumping Behavior of the Polychaete Lanice conchilega

    Anthropogenic low-frequency noise (LFN) is a continuously growing stressor in our oceans. How this noise affects most groups of marine animals is...
    Sheng V. Wang, Carl Van Colen, Jan Beermann in The Effects of Noise on Aquatic Life
    Living reference work entry 2023
  13. Bioaccumulation of heavy metals in seafood resources from the southwest coast of India: human health risk assessment and importance of seafood security

    Objectives

    The present study was to evaluate the bioaccumulation of heavy metals and possible human health risk from contaminated seafood resources...

    Kariyil Veettil Neethu, Punnakkal Hari Praved, ... Krishna Venkatarama Sharma in Toxicology and Environmental Health Sciences
    Article 30 April 2024
  14. Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

    Background

    Mangrove wetlands are coastal ecosystems with important ecological features and provide habitats for diverse microorganisms with key roles...

    Zhi-Feng Zhang, Li-Rui Liu, ... Meng Li in Microbiome
    Article Open access 23 August 2023
  15. Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones

    Background

    Seagrasses offer various ecosystem services and possess high levels of primary productivity. However, the development of mariculture has...

    Hao Sun, Tianyu Wang, ... Yanying Zhang in Microbiome
    Article Open access 14 February 2024
  16. Whole-Sediment Toxicity Bioassay to Determine Bioavailability and Effects of Aquatic Contaminants Using Zebrafish Embryos

    Sediments are a major issue for many scientists and authorities due to their close linkage to the aquatic food web and their potential to accumulate...
    Protocol 2020
  17. Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments

    Background

    In anoxic coastal and marine sediments, degradation of methylated compounds is the major route to the production of methane, a powerful...

    S. L. Tsola, Y. Zhu, ... Ö. Eyice in Microbiome
    Article Open access 03 January 2024
  18. Decline of a distinct coral reef holobiont community under ocean acidification

    Background

    Microbes play vital roles across coral reefs both in the environment and inside and upon macrobes (holobionts), where they support critical...

    Jake Williams, Nathalie Pettorelli, ... Emma Ransome in Microbiome
    Article Open access 17 April 2024
  19. Diversity of Sarcocystis parasites in southeastern Baltic Sea catchment ecosystems

    Currently, research on apicomplexan Sarcocystis parasites is mainly carried out by analyzing animal carcasses. However, environmental studies would...

    Agnė Baranauskaitė, Petras Prakas, ... Živilė Strazdaitė-Žielienė in Parasitology Research
    Article 20 May 2024
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