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  1. PdmIRD: missense variants pathogenicity prediction for inherited retinal diseases in a disease-specific manner

    Accurate discrimination of pathogenic and nonpathogenic variation remains an enormous challenge in clinical genetic testing of inherited retinal...

    Bing Zeng, Dong Cheng Liu, ... Bo Qin in Human Genetics
    Article 13 March 2024
  2. Pathogenicity of de novo CACNA1D Ca2+ channel variants predicted from sequence co-variation

    Voltage-gated L-type Cav1.3 Ca 2+ channels support numerous physiological functions including neuronal excitability, sinoatrial node pacemaking,...

    Xuechen Tang, Nadine J. Ortner, ... Klaus R. Liedl in European Journal of Human Genetics
    Article Open access 29 March 2024
  3. Isolation and pathogenicity of porcine circovirus type 2 in mice from Guangxi province, China

    Background

    Porcine circovirus type 2 (PCV2), a member of the genus Circovirus and family Circoviridae , is a closed, small, circular, and...

    Qiulin Jiao, Liuyue Yang, ... Xiangmin Li in Virology Journal
    Article Open access 29 August 2023
  4. Augmentation of Omicron BA.1 pathogenicity in hamsters using intratracheal inoculation

    The Omicron BA.1 variant of SARS-CoV-2 displays an attenuated phenotype in the Syrian hamster after intranasal inoculation. This is characterized by...

    Julia R. Port, Claude Kwe Yinda, ... Vincent J. Munster in npj Viruses
    Article Open access 16 January 2024
  5. MHC class I links with severe pathogenicity in C57BL/6N mice infected with SARS-CoV-2/BMA8

    Background

    The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes non-symptomatic infection, mild influenza-like symptoms to...

    Tian Qin, Beilei Shen, ... Yuwei Gao in Virology Journal
    Article Open access 20 April 2023
  6. Pathogenicity of Congenital Adrenal Hyperplasia Induced by the p.P377L Mutation of CYP11B1

    CYP11B1 encodes an 11β-hydroxylase that is involved in the catalysis of adrenal glucocorticoids and the production of cortisol. Mutations in CYP11B1 ...

    Guoying Ma, Reziwanguli Wusiman, ... Yanying Guo in Biochemical Genetics
    Article 07 September 2023
  7. A yeast based assay establishes the pathogenicity of novel missense ACTA2 variants associated with aortic aneurysms

    The ACTA2 gene codes for alpha-smooth muscle actin, a critical component of the contractile apparatus of the vascular smooth muscle cells. Autosomal...

    Cristina Calderan, Ugo Sorrentino, ... Maria Andrea Desbats in European Journal of Human Genetics
    Article 15 March 2024
  8. Ovarian cancer pathology characteristics as predictors of variant pathogenicity in BRCA1 and BRCA2

    Background

    The distribution of ovarian tumour characteristics differs between germline BRCA1 and BRCA2 pathogenic variant carriers and non-carriers....

    Denise G. O’Mahony, Susan J. Ramus, ... Elizabeth Santana dos Santos in British Journal of Cancer
    Article Open access 19 April 2023
  9. Parabacteroides distasonis regulates the infectivity and pathogenicity of SVCV at different water temperatures

    Background

    Spring viremia of carp virus (SVCV) infects a wide range of fish species and causes high mortality rates in aquaculture. This viral...

    Yujun Zhang, Yan Gao, ... Xueqin Liu in Microbiome
    Article Open access 17 July 2024
  10. Evolution of Pathogenicity and Virulence

    Evolutionary biologists define virulence as reduction in host fitness (survival and reproduction) caused by pathogens. The avirulence hypothesis...
    Michael G. Milgroom in Biology of Infectious Disease
    Chapter 2023
  11. Evaluation of in silico pathogenicity prediction tools for the classification of small in-frame indels

    Background

    The use of in silico pathogenicity predictions as evidence when interpreting genetic variants is widely accepted as part of standard...

    S. Cannon, M. Williams, ... C. F. Wright in BMC Medical Genomics
    Article Open access 28 February 2023
  12. Hypovirulence-associated mycovirus epidemics cause pathogenicity degeneration of Beauveria bassiana in the field

    Background

    The entomogenous fungus Beauveria bassiana is used as a biological insecticide worldwide, wild B. bassiana strains with high pathogenicity...

    Zhengkun Zhang, Wenbo Guo, ... Qiyun Li in Virology Journal
    Article Open access 03 November 2023
  13. How human genetic context can inform pathogenicity classification: FGFR1 variation in idiopathic hypogonadotropic hypogonadism

    Precision medicine requires precise genetic variant interpretation, yet many disease-associated genes have unresolved variants of unknown...

    Wanxue Xu, Lacey Plummer, ... Margaret F. Lippincott in Human Genetics
    Article 07 October 2023
  14. Prioritizing genomic variants pathogenicity via DNA, RNA, and protein-level features based on extreme gradient boosting

    Genetic diseases are mostly implicated with genetic variants, including missense, synonymous, non-sense, and copy number variants. These different...

    Maolin Ding, Ken Chen, ... Huiying Zhao in Human Genetics
    Article 04 April 2024
  15. Progesterone attenuates Th17-cell pathogenicity in autoimmune uveitis via Id2/Pim1 axis

    Background

    Autoimmune uveitis (AU) is the most common ophthalmic autoimmune disease (AD) and is characterized by a complex etiology, high morbidity,...

    Xiuxing Liu, Chenyang Gu, ... Wenru Su in Journal of Neuroinflammation
    Article Open access 21 June 2023
  16. Hemizygosity can reveal variant pathogenicity on the X-chromosome

    Pathogenic variants on the X-chromosome can have more severe consequences for hemizygous males, while heterozygote females can avoid severe...

    Timothy H. Ciesielski, Jacquelaine Bartlett, ... Scott M. Williams in Human Genetics
    Article 22 August 2022
  17. X-CAP improves pathogenicity prediction of stopgain variants

    Stopgain substitutions are the third-largest class of monogenic human disease mutations and often examined first in patient exomes. Existing...

    Ruchir Rastogi, Peter D. Stenson, ... Gill Bejerano in Genome Medicine
    Article Open access 29 July 2022
  18. Genetic characterization and pathogenicity of a Eurasian avian-like H1N1 swine influenza reassortant virus

    Background

    Swine influenza viruses (SIV), considered the “mixing vessels” of influenza viruses, posed a significant threat to global health systems...

    Hechao Zhu, Xiangmin Li, ... Ping Qian in Virology Journal
    Article Open access 02 December 2022
  19. Quantitative thresholds for variant enrichment in 13,845 cases: improving pathogenicity classification in genetic hearing loss

    Background

    The American College of Medical Genetics and Genomics (ACMG)/Association for Molecular Pathology (AMP) guidelines recommend using variant...

    Sihan Liu, Mingjun Zhong, ... Huijun Yuan in Genome Medicine
    Article Open access 18 December 2023
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