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Viral Metagenomics Methods and Protocols
This second edition volume expands on the previous edition with discussions about the latest viral metagenomics aspects covering a range of different...
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Exploring the Archaeal Virosphere by Metagenomics
During the past decade, environmental research has demonstrated that archaea are abundant and widespread in nature and play important ecological...
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Metagenomics for Drug Discovery
In the twenty-first century, approximately 100 years since the discovery and use of the first drug penicillin, antimicrobial resistance has become...
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Genome-resolved metagenomics: a game changer for microbiome medicine
Recent substantial evidence implicating commensal bacteria in human diseases has given rise to a new domain in biomedical research: microbiome...
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Unraveling metagenomics through long-read sequencing: a comprehensive review
The study of microbial communities has undergone significant advancements, starting from the initial use of 16S rRNA sequencing to the adoption of...
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A Review of Web-Based Metagenomics Platforms for Analysing Next-Generation Sequence Data
Metagenomics has now evolved as a promising technology for understanding the microbial population in the environment. By metagenomics, a number of...
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Clinical applications of metagenomics next-generation sequencing in infectious diseases
Infectious diseases are a great threat to human health. Rapid and accurate detection of pathogens is important in the diagnosis and treatment of...
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Optimized Recovery of Viral DNA and RNA from Blood Plasma for Viral Metagenomics
Metagenomics is vastly improving our ability to discover new viruses, as well as their possible associations with disease. However, metagenomics has...
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Direct metagenomics investigation of non-surgical hard-to-heal wounds: a review
BackgroundNon-surgical chronic wounds, including diabetes-related foot diseases (DRFD), pressure injuries (PIs) and venous leg ulcers (VLU), are...
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Analysis and Interpretation of metagenomics data: an approach
Advances in next-generation sequencing technologies have accelerated the momentum of metagenomic studies, which is increasing yearly. The...
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Using strain-resolved analysis to identify contamination in metagenomics data
BackgroundMetagenomics analyses can be negatively impacted by DNA contamination. While external sources of contamination such as DNA extraction kits...
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CViewer: a Java-based statistical framework for integration of shotgun metagenomics with other omics datasets
BackgroundShotgun metagenomics for microbial community survey recovers enormous amount of information for microbial genomes that include their...
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Unmasking Bartonella henselae infection in the shadows of long COVID thanks to clinical metagenomics
The diagnosis of long COVID often relies on symptoms post-COVID-19, occasionally lacking biological evidence. This case study illustrates how...
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Comparison of Three Viral Nucleic Acid Preamplification Pipelines for Sewage Viral Metagenomics
Viral metagenomics is a useful tool for detecting multiple human viruses in urban sewage. However, more refined protocols are required for its...
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Development and proof-of-concept demonstration of a clinical metagenomics method for the rapid detection of bloodstream infection
BackgroundThe timely and accurate diagnosis of bloodstream infection (BSI) is critical for patient management. With longstanding challenges for...
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An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics
BackgroundEffective surveillance of microbial communities in the healthcare environment is increasingly important in infection prevention....
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Metagenomics reveals the temporal dynamics of the rumen resistome and microbiome in goat kids
BackgroundThe gut microbiome of domestic animals carries antibiotic resistance genes (ARGs) which can be transmitted to the environment and humans,...
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Shotgun metagenomics reveals interkingdom association between intestinal bacteria and fungi involving competition for nutrients
BackgroundThe accuracy of internal-transcribed-spacer (ITS) and shotgun metagenomics has not been robustly evaluated, and the effect of diet on the...
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Bioprospection of Marine Sponge Microbiome for Bioactive Metabolites Employing Advanced Metagenomics Tools
The marine environment is an invaluable natural goods and biomaterials resource. Sponges, abundant members of marine benthic ecosystems, are a...
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Characterization of Tobacco Microbiome by Metagenomics Approach
Chronic consumption of tobacco in all forms, either smoked/smokeless forms, causes major health hazards to humans that include cancer,...
