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Improvement of the ayu (Plecoglossus altivelis) draft genome using Hi-C sequencing
ObjectiveThe ayu or sweetfish Plecoglossus altivelis is ray-finned fish that is widely distributed in East Asia. The genome size of ayu was...
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Chloroplast genome draft assembly of Falcataria moluccana using hybrid sequencing technology
ObjectivesFalcataria moluccana , known locally as Sengon, is a fast-growing legume tree that is commonly planted in community forests of Java Island,...
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Draft genome sequence of two “Candidatus Intestinicoccus colisanans” strains isolated from faeces of healthy humans
ObjectivesIn order to provide a better insight into the functional capacity of the human gut microbiome, we isolated a novel bacterium, “ Candidatus ...
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First draft genome and transcriptome of Cercosporidium personatum, causal agent of late leaf spot disease of peanut
ObjectiveTwo main fungal leaf spot diseases occur in peanut, namely early leaf spot (ELS) and late leaf spot (LLS), these cause a yearly average of...
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PacBio long read-assembled draft genome of Pythium insidiosum strain Pi-S isolated from a Thai patient with pythiosis
ObjectivesPythium insidiosum is the causative agent of pythiosis, a difficult-to-treat condition, in humans and animals worldwide. Biological...
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Draft genomes of Blastocystis subtypes from human samples of Colombia
BackgroundBlastocystis is one of the most common eukaryotic microorganisms colonizing the intestines of both humans and animals, but the conditions...
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MGI short-read genome assemblies of Pythium insidiosum (reclassified as Pythium periculosum) strains Pi057C3 and Pi050C3
ObjectivesPythium insidiosum causes a difficult-to-treat infectious condition called pythiosis, with high morbidity and mortality. So far, genome...
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Draft genome sequence of a nontypeable Haemophilus influenzae strain used in the study of human respiratory infection
ObjectivesNontypeable Haemophilus influenzae (NTHi) is an important human respiratory bacterium that can cause a range of diseases including...
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Genome-resolved metagenomics: a game changer for microbiome medicine
Recent substantial evidence implicating commensal bacteria in human diseases has given rise to a new domain in biomedical research: microbiome...
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The draft genome of Labeo catla
ObjectiveLabeo catla (catla), one of the three Indian major carps, is native to the Indo-Gangetic riverine system of India as well as the rivers of...
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Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes
BackgroundThe accurate and comprehensive analyses of genome-resolved metagenomics largely depend on the reconstruction of reference-quality (complete...
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Detection of four isomers of the human cytomegalovirus genome using nanopore long-read sequencing
Human cytomegalovirus has a linear DNA genome with a total length of approximately 235 kb. This large genome is divided into two domains, "Long" and...
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A graph-based genome and pan-genome variation of the model plant Setaria
Setaria italica (foxtail millet), a founder crop of East Asian agriculture, is a model plant for C4 photosynthesis and developing approaches to...
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De novo assembly and annotation of the mangrove cricket genome
ObjectivesThe mangrove cricket, Apteronemobius asahinai , shows endogenous activity rhythms that synchronize with the tidal cycle (i.e., a...
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Transcriptome driven discovery of novel candidate genes for human neurological disorders in the telomer-to-telomer genome assembly era
BackgroundWith the first complete draft of a human genome, the Telomere-to-Telomere Consortium unlocked previously concealed genomic regions for...
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Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester
ObjectivesClostridium species of the order Clostridiales are mostly strictly anaerobic rod-shaped bacteria. They can be detected in a variety of...
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Draft genome assembly of Passalora sequoiae a needle blight pathogen on Leyland cypress
ObjectivePassalora sequoiae (family Mycosphaerellaceae) causes a twig blight on Leyland cypress that requires numerous fungicide applications...
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Genome sequence of a virulent and hypermucoviscous-like Klebsiella michiganensis clinical isolate
ObjectivesThe hypermucoviscous-like phenotype has been described in Klebsiella pneumoniae species complex (KpSC) and was described as a contributor...
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A complete telomere-to-telomere assembly of the maize genome
A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of genomic research. Through generating deep coverage ultralong...
