Abstract
While much excitement has attended the discovery and study of circular RNAs, a new study in Cell Reports suggests that most mammalian circRNAs are not only functionless, but in fact costly. Comparison across three species is also consistent with the influential but rarely tested Drift-Barrier Hypothesis of molecular complexity. According to this hypothesis, nonessential genomic elements are slightly deleterious elements that fix by genetic drift and, thus, are generally more abundant in species with small effective population sizes. I discuss the implications of these new results for the Drift-Barrier hypothesis. In particular, I note the distinction between two classes of genomic elements, based on whether they are created by ‘standard’ small-scale mutations (basepair substitutions, indels, etc.) or larger, more idiosyncratic mutations (segmental duplications, transposable element propagation, etc.) I suggest that the Drift-Barrier Hypothesis is likely to apply to the former class, but perhaps not the latter class.
References
Gao LZ, Innan H (2004) Very low gene duplication rate in the yeast genome. Science 306(5700):1367–1370
Hartl DL, Clark AG, Clark AG (1997) Principles of population genetics, vol 116. Sinauer Associates, Sunderland
Hessen DO, Jeyasingh PD, Neiman M, Weider LJ (2010) Genome streamlining and the elemental costs of growth. Trends Ecol Evol 25(2):75–80
Hodgkinson A, Eyre-Walker A (2011) Variation in the mutation rate across mammalian genomes. Nat Rev Genet 12(11):756–766
Huff JT, Zilberman D, Roy SW (2016) Mechanism for DNA transposons to generate introns on genomic scales. Nature 538(7626):533–536
Kristensen LS, Andersen MS, Stagsted LV, Ebbesen KK, Hansen TB, Kjems J (2019) The biogenesis, biology and characterization of circular RNAs. Nat Rev Genet 20(11):675–691
Lynch M, Conery JS (2003) The origins of genome complexity. Science 302(5649):1401–1404
Lynch M (2007) The origins of genome architecture, vol 98. Sinauer Associates, Sunderland
Mourier T, Jeffares DC (2003) Eukaryotic intron loss. Science 300(5624):1393–1393
Oliver KR, Greene WK (2009) Transposable elements: powerful facilitators of evolution. Bioessays 31(7):703–714
Roddy AB, Alvarez-Ponce D, Roy SW (2021) Mammals with small populations do not exhibit larger genomes. Mol Biol Evol. https://doi.org/10.1093/molbev/msab142
Vinogradov AE (2004) Compactness of human housekeeping genes: selection for economy or genomic design? Trends Genet 20(5):248–253
Whitney KD, Garland T Jr (2010) Did genetic drift drive increases in genome complexity? PLoS Genet 6(8):e1001080
Xu C, Zhang J (2021) Mammalian circular RNAs result largely from splicing errors. Cell Rep 36(4):109439
Yang YF, Zhu T, Niu DK (2013) Association of intron loss with high mutation rate in Arabidopsis: implications for genome size evolution. Genome Biol Evol 5(4):723–733
Acknowledgements
This work was supported by National Science Foundation award number 1751372.
Author information
Authors and Affiliations
Corresponding author
Additional information
Handling editor: David Liberles.
Rights and permissions
About this article
Cite this article
Roy, S.W. Costly circRNAs, Effective Population Size, and the Origins of Molecular Complexity. J Mol Evol 89, 598–600 (2021). https://doi.org/10.1007/s00239-021-10033-1
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00239-021-10033-1